Model info
Transcription factorMef2c
ModelMEF2C_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusdddYTATTTWWRKhh
Best auROC (human)0.9560922134976377
Best auROC (mouse)0.9293646427730433
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)9
Aligned words264
TF familyRegulators of differentiation{5.1.1}
TF subfamilyMEF-2{5.1.1.1}
MGI99458
EntrezGene17260
UniProt IDMEF2C_MOUSE
UniProt ACQ8CFN5
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.37721
0.0005 6.27341
0.0001 8.09891
GTEx tissue expression atlas Mef2c expression
ReMap ChIP-seq dataset list Mef2c datasets
Motifs in JASPAR
PCM
ACGT
0146.037.091.090.0
0259.028.065.0112.0
0329.020.097.0118.0
046.0203.015.040.0
050.014.03.0247.0
06241.01.04.018.0
0735.05.02.0222.0
0828.011.00.0225.0
098.012.01.0243.0
1043.018.07.0196.0
1129.014.022.0199.0
12153.00.0107.04.0
1341.06.0172.045.0
1480.0118.032.034.0
1587.066.019.092.0
PWM
ACGT
01-0.352-0.5630.3160.305
02-0.11-0.83-0.0150.52
03-0.796-1.1470.3780.572
04-2.211.109-1.414-0.487
05-3.878-1.477-2.731.304
061.28-3.338-2.525-1.246
07-0.616-2.355-2.9891.198
08-0.83-1.693-3.8781.212
09-1.97-1.616-3.3381.288
10-0.417-1.246-2.0831.075
11-0.796-1.477-1.0581.09
120.829-3.8780.475-2.525
13-0.464-2.210.945-0.373
140.1890.572-0.702-0.644
150.2710.0-1.1950.326