Model info
Transcription factorMef2d
ModelMEF2D_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusdKYTATTTWTAKhh
Best auROC (human)0.8117341070621057
Best auROC (mouse)0.9701482212689309
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)27
Aligned words500
TF familyRegulators of differentiation{5.1.1}
TF subfamilyMEF-2{5.1.1.1}
MGI99533
EntrezGene17261
UniProt IDMEF2D_MOUSE
UniProt ACQ63943
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.70261
0.0005 5.72481
0.0001 7.81901
GTEx tissue expression atlas Mef2d expression
ReMap ChIP-seq dataset list Mef2d datasets
Motifs in JASPAR
PCM
ACGT
01147.030.0151.0172.0
0236.037.0244.0183.0
0313.0377.030.080.0
041.012.03.0484.0
05481.00.02.017.0
0629.02.02.0467.0
0740.011.04.0445.0
0845.016.03.0436.0
09148.045.07.0300.0
1038.05.025.0432.0
11382.00.0112.06.0
1243.017.0394.046.0
13151.0237.032.080.0
14155.0143.043.0159.0
PWM
ACGT
010.16-1.3890.1870.316
02-1.215-1.1890.6630.377
03-2.1631.096-1.389-0.439
04-3.903-2.234-3.3251.345
051.338-4.4-3.573-1.92
06-1.421-3.573-3.5731.309
07-1.114-2.311-3.1261.261
08-1.0-1.975-3.3251.241
090.167-1.0-2.6940.868
10-1.163-2.961-1.5611.231
111.109-4.4-0.108-2.819
12-1.044-1.921.14-0.979
130.1870.634-1.328-0.439
140.2130.133-1.0440.238