Model info
Transcription factorMsgn1
ModelMSGN1_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
C
Motif rank
0
ConsensusnvCCATTTGKYhhn
Best auROC (human)
Best auROC (mouse)0.9987277271395645
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words500
TF familyTal-related factors{1.2.3}
TF subfamilyMesp-like factors{1.2.3.3}
MGI1860483
EntrezGene56184
UniProt IDMSGN1_MOUSE
UniProt ACQ9JK54
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.73291
0.0005 9.38741
0.0001 15.12927
GTEx tissue expression atlas Msgn1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0138.07.094.07.088.011.018.014.057.014.053.06.025.015.046.07.0
026.0195.07.00.05.042.00.00.04.0205.02.00.00.032.02.00.0
030.015.00.00.01.0473.00.00.00.011.00.00.00.00.00.00.0
041.00.00.00.0453.07.05.034.00.00.00.00.00.00.00.00.0
050.04.03.0447.00.00.00.07.00.00.00.05.00.00.01.033.0
060.00.00.00.00.01.00.03.00.04.00.00.032.073.00.0387.0
070.00.00.032.00.00.00.078.00.00.00.00.00.00.00.0390.0
080.00.00.00.00.00.00.00.00.00.00.00.00.00.0499.01.0
090.00.00.00.00.00.00.00.02.079.0172.0246.00.00.01.00.0
100.01.01.00.00.034.00.045.03.083.01.086.00.0130.07.0109.0
111.02.00.00.054.0120.010.064.00.06.01.02.017.0119.056.048.0
129.025.025.013.059.098.05.085.06.020.014.027.014.057.018.025.0
1317.020.031.020.044.057.04.095.014.022.019.07.07.061.051.031.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.193-1.4541.093-1.4541.027-1.022-0.543-0.7880.595-0.7880.523-1.6-0.22-0.7210.383-1.454
02-1.61.821-1.454-4.4-1.770.293-4.4-4.4-1.9751.871-2.584-4.4-4.40.023-2.584-4.4
03-4.4-0.721-4.4-4.4-3.1262.706-4.4-4.4-4.4-1.022-4.4-4.4-4.4-4.4-4.4-4.4
04-3.126-4.4-4.4-4.42.662-1.454-1.770.083-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
05-4.4-1.975-2.2342.649-4.4-4.4-4.4-1.454-4.4-4.4-4.4-1.77-4.4-4.4-3.1260.054
06-4.4-4.4-4.4-4.4-4.4-3.126-4.4-2.234-4.4-1.975-4.4-4.40.0230.841-4.42.505
07-4.4-4.4-4.40.023-4.4-4.4-4.40.907-4.4-4.4-4.4-4.4-4.4-4.4-4.42.513
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.759-3.126
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.5840.921.6952.053-4.4-4.4-3.126-4.4
10-4.4-3.126-3.126-4.4-4.40.083-4.40.361-2.2340.969-3.1261.004-4.41.416-1.4541.241
11-3.126-2.584-4.4-4.40.5421.336-1.1140.711-4.4-1.6-3.126-2.584-0.5991.3280.5780.425
12-1.215-0.22-0.22-0.860.631.135-1.770.993-1.6-0.439-0.788-0.144-0.7880.595-0.543-0.22
13-0.599-0.439-0.008-0.4390.3390.595-1.9751.104-0.788-0.346-0.49-1.454-1.4540.6630.485-0.008