Model info
Transcription factorMsgn1
ModelMSGN1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusnCCATTTGKYhh
Best auROC (human)
Best auROC (mouse)0.9985760110548922
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words500
TF familyTal-related factors{1.2.3}
TF subfamilyMesp-like factors{1.2.3.3}
MGI1860483
EntrezGene56184
UniProt IDMSGN1_MOUSE
UniProt ACQ9JK54
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.84898
0.0005 5.09924
0.0001 7.636939999999999
GTEx tissue expression atlas Msgn1 expression
Motifs in JASPAR
PCM
ACGT
01211.048.0211.030.0
0216.0470.013.01.0
034.0496.00.00.0
04459.04.03.034.0
050.04.08.0488.0
0629.076.00.0395.0
070.00.00.0500.0
080.00.0500.00.0
093.071.0182.0244.0
102.0239.015.0244.0
1176.0244.066.0114.0
1287.0195.063.0155.0
PWM
ACGT
010.519-0.9380.519-1.389
02-1.9751.315-2.163-3.903
03-3.1261.369-4.4-4.4
041.292-3.126-3.325-1.27
05-4.4-3.126-2.5841.353
06-1.421-0.49-4.41.142
07-4.4-4.4-4.41.377
08-4.4-4.41.377-4.4
09-3.325-0.5560.3720.663
10-3.5730.642-2.0340.663
11-0.490.663-0.628-0.091
12-0.3570.44-0.6730.213