Model info
Transcription factorMsgn1
ModelMSGN1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusnCCATTTGKYhh
Best auROC (human)
Best auROC (mouse)0.9985760110548922
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words500
TF familyTal-related factors{1.2.3}
TF subfamilyMesp-like factors{1.2.3.3}
MGI1860483
EntrezGene56184
UniProt IDMSGN1_MOUSE
UniProt ACQ9JK54
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.84128
0.0005 5.10326
0.0001 7.63714
GTEx tissue expression atlas Msgn1 expression
ReMap ChIP-seq dataset list Msgn1 datasets
Motifs in JASPAR
PCM
ACGT
01211.048.0211.030.0
0216.0470.013.01.0
034.0496.00.00.0
04459.04.03.034.0
050.04.08.0488.0
0629.076.00.0395.0
070.00.00.0500.0
080.00.0500.00.0
093.071.0182.0244.0
102.0239.015.0244.0
1176.0244.066.0114.0
1287.0195.063.0155.0
PWM
ACGT
010.519-0.9380.519-1.389
02-1.9751.315-2.163-3.903
03-3.1261.369-4.4-4.4
041.292-3.126-3.325-1.27
05-4.4-3.126-2.5841.353
06-1.421-0.49-4.41.142
07-4.4-4.4-4.41.377
08-4.4-4.41.377-4.4
09-3.325-0.5560.3720.663
10-3.5730.642-2.0340.663
11-0.490.663-0.628-0.091
12-0.3570.44-0.6730.213