Model info
Transcription factorMsx2
ModelMSX2_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length7
Quality
D
Motif rank
0
ConsensusTAATTnb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words12
TF familyNK-related factors{3.1.2}
TF subfamilyMSX{3.1.2.11}
MGI97169
EntrezGene17702
UniProt IDMSX2_MOUSE
UniProt ACQ03358
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.37262
0.0005 6.01797
0.0001 6.60451
GTEx tissue expression atlas Msx2 expression
ReMap ChIP-seq dataset list Msx2 datasets
Motifs in JASPAR
PCM
ACGT
010.00.00.89810.102
0210.1020.00.8980.0
039.990.01.010.0
040.00.00.011.0
052.1330.00.08.867
062.021.9083.9293.143
071.2631.3753.1715.191
PWM
ACGT
01-1.721-1.721-0.8051.162
021.162-1.721-0.805-1.721
031.151-1.721-0.733-1.721
04-1.721-1.721-1.7211.242
05-0.204-1.721-1.7211.039
06-0.246-0.2890.3010.111
07-0.587-0.5290.1180.547