Model info
Transcription factorMyf5
ModelMYF5_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
D
Motif rank
0
ConsensusbCASCTGTYnh
Best auROC (human)
Best auROC (mouse)0.7866114934348412
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)2
Aligned words449
TF familyMyoD / ASC-related factors{1.2.2}
TF subfamilyMyogenic transcription factors{1.2.2.1}
MGI97252
EntrezGene17877
UniProt IDMYF5_MOUSE
UniProt ACP24699
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.11381
0.0005 6.01092
0.0001 7.84389
GTEx tissue expression atlas Myf5 expression
ReMap ChIP-seq dataset list Myf5 datasets
Motifs in JASPAR
PCM
ACGT
0171.0133.0168.076.0
026.0424.07.011.0
03438.01.02.07.0
0411.0113.0303.021.0
056.0412.04.026.0
067.05.00.0436.0
074.019.0366.059.0
081.076.010.0361.0
091.0144.036.0267.0
1098.0164.067.0119.0
1180.0178.050.0140.0
PWM
ACGT
01-0.4480.170.401-0.381
02-2.7141.321-2.589-2.204
031.354-3.805-3.472-2.589
04-2.2040.0090.987-1.617
05-2.7141.293-3.023-1.417
06-2.589-2.856-4.3091.349
07-3.023-1.711.175-0.629
08-3.805-0.381-2.2871.161
09-3.8050.248-1.1070.861
10-0.1320.377-0.5050.06
11-0.3310.458-0.790.22