Model info
Transcription factorMYOD1
(GeneCards)
ModelMYOD1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusvCASCTGYYnbbbbbnnb
Best auROC (human)0.995
Best auROC (mouse)0.997
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words437
TF familyMyoD / ASC-related factors {1.2.2}
TF subfamilyMyogenic transcription factors {1.2.2.1}
HGNCHGNC:7611
EntrezGeneGeneID:4654
(SSTAR profile)
UniProt IDMYOD1_HUMAN
UniProt ACP15172
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.57226
0.0005 8.87781
0.0001 14.00106
GTEx tissue expression atlas MYOD1 expression
ReMap ChIP-seq dataset list MYOD1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.0122.00.00.01.0112.00.01.00.0161.01.01.01.036.00.00.0
023.00.00.00.0415.02.03.011.01.00.00.00.00.00.02.00.0
030.0137.0268.014.00.02.00.00.00.04.01.00.00.03.08.00.0
040.00.00.00.00.0144.00.02.02.0269.03.03.00.014.00.00.0
050.00.00.02.04.02.00.0421.00.00.00.03.00.00.00.05.0
060.00.04.00.00.00.01.01.00.00.00.00.00.00.0428.03.0
070.00.00.00.00.00.00.00.04.0166.017.0246.00.00.02.02.0
081.01.01.01.011.049.01.0105.00.08.03.08.03.0134.029.082.0
093.05.05.02.076.044.029.043.08.017.06.03.016.061.098.021.0
1015.044.025.019.017.061.06.043.06.090.010.032.012.030.018.09.0
117.013.019.011.035.058.09.0123.09.021.016.013.010.025.045.023.0
126.04.045.06.032.028.015.042.015.031.033.010.06.022.0126.016.0
132.017.034.06.019.037.03.026.05.0105.041.068.03.023.045.03.0
142.06.018.03.037.076.06.063.08.057.041.017.02.072.020.09.0
1511.012.013.013.074.053.013.071.021.026.028.010.04.034.028.026.0
1635.022.028.025.049.023.015.038.021.028.017.016.021.018.061.020.0
1712.016.030.068.012.025.05.049.013.018.08.082.03.033.018.045.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-2.9991.486-4.289-4.289-2.9991.401-4.289-2.999-4.2891.763-2.999-2.999-2.9990.273-4.289-4.289
02-2.103-4.289-4.289-4.2892.708-2.454-2.103-0.889-2.999-4.289-4.289-4.289-4.289-4.289-2.454-4.289
03-4.2891.6022.271-0.655-4.289-2.454-4.289-4.289-4.289-1.844-2.999-4.289-4.289-2.103-1.195-4.289
04-4.289-4.289-4.289-4.289-4.2891.651-4.289-2.454-2.4542.275-2.103-2.103-4.289-0.655-4.289-4.289
05-4.289-4.289-4.289-2.454-1.844-2.454-4.2892.722-4.289-4.289-4.289-2.103-4.289-4.289-4.289-1.638
06-4.289-4.289-1.844-4.289-4.289-4.289-2.999-2.999-4.289-4.289-4.289-4.289-4.289-4.2892.739-2.103
07-4.289-4.289-4.289-4.289-4.289-4.289-4.289-4.289-1.8441.793-0.4662.186-4.289-4.289-2.454-2.454
08-2.999-2.999-2.999-2.999-0.8890.578-2.9991.336-4.289-1.195-2.103-1.195-2.1031.580.0591.09
09-2.103-1.638-1.638-2.4541.0150.4720.0590.449-1.195-0.466-1.468-2.103-0.5250.7961.268-0.259
10-0.5880.472-0.087-0.357-0.4660.796-1.4680.449-1.4681.183-0.9810.156-0.8050.093-0.41-1.083
11-1.322-0.727-0.357-0.8890.2450.746-1.0831.494-1.083-0.259-0.525-0.727-0.981-0.0870.494-0.169
12-1.468-1.8440.494-1.4680.1560.025-0.5880.426-0.5880.1250.187-0.981-1.468-0.2131.518-0.525
13-2.454-0.4660.216-1.468-0.3570.3-2.103-0.049-1.6381.3360.4020.904-2.103-0.1690.494-2.103
14-2.454-1.468-0.41-2.1030.31.015-1.4680.828-1.1950.7290.402-0.466-2.4540.961-0.307-1.083
15-0.889-0.805-0.727-0.7270.9880.656-0.7270.947-0.259-0.0490.025-0.981-1.8440.2160.025-0.049
160.245-0.2130.025-0.0870.578-0.169-0.5880.326-0.2590.025-0.466-0.525-0.259-0.410.796-0.307
17-0.805-0.5250.0930.904-0.805-0.087-1.6380.578-0.727-0.41-1.1951.09-2.1030.187-0.410.494