Model info
Transcription factorMyod1
ModelMYOD1_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusvCAGCTGTYvY
Best auROC (human)0.9819276577067088
Best auROC (mouse)0.9917280717864425
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words501
TF familyMyoD / ASC-related factors{1.2.2}
TF subfamilyMyogenic transcription factors{1.2.2.1}
MGI97275
EntrezGene17927
UniProt IDMYOD1_MOUSE
UniProt ACP10085
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.118825
0.0005 4.1881900000000005
0.0001 7.417425
GTEx tissue expression atlas Myod1 expression
Motifs in JASPAR
PCM
ACGT
0173.0139.0234.054.0
021.0499.00.00.0
03496.01.02.01.0
040.076.0420.04.0
050.0498.02.00.0
062.00.00.0498.0
070.00.0500.00.0
080.0193.02.0305.0
093.0223.027.0247.0
1076.0209.0154.061.0
1134.0286.060.0120.0
PWM
ACGT
01-0.5290.1050.621-0.823
02-3.9031.375-4.4-4.4
031.369-3.903-3.573-3.903
04-4.4-0.491.203-3.126
05-4.41.373-3.573-4.4
06-3.573-4.4-4.41.373
07-4.4-4.41.377-4.4
08-4.40.43-3.5730.885
09-3.3250.573-1.4890.675
10-0.490.5090.206-0.705
11-1.270.821-0.721-0.04