Model info
Transcription factorMyod1
ModelMYOD1_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusvCAGCTGTYvY
Best auROC (human)0.9819276577067088
Best auROC (mouse)0.9917280717864425
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words501
TF familyMyoD / ASC-related factors{1.2.2}
TF subfamilyMyogenic transcription factors{1.2.2.1}
MGI97275
EntrezGene17927
UniProt IDMYOD1_MOUSE
UniProt ACP10085
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.11311
0.0005 4.19011
0.0001 7.42027
GTEx tissue expression atlas Myod1 expression
ReMap ChIP-seq dataset list Myod1 datasets
Motifs in JASPAR
PCM
ACGT
0173.0139.0234.054.0
021.0499.00.00.0
03496.01.02.01.0
040.076.0420.04.0
050.0498.02.00.0
062.00.00.0498.0
070.00.0500.00.0
080.0193.02.0305.0
093.0223.027.0247.0
1076.0209.0154.061.0
1134.0286.060.0120.0
PWM
ACGT
01-0.5290.1050.621-0.823
02-3.9031.375-4.4-4.4
031.369-3.903-3.573-3.903
04-4.4-0.491.203-3.126
05-4.41.373-3.573-4.4
06-3.573-4.4-4.41.373
07-4.4-4.41.377-4.4
08-4.40.43-3.5730.885
09-3.3250.573-1.4890.675
10-0.490.5090.206-0.705
11-1.270.821-0.721-0.04