Model info
| Transcription factor | NANOG (GeneCards) | ||||||||
| Model | NANOG_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vRSCCATYAvn | ||||||||
| Best auROC (human) | 0.769 | ||||||||
| Best auROC (mouse) | 0.825 | ||||||||
| Peak sets in benchmark (human) | 15 | ||||||||
| Peak sets in benchmark (mouse) | 38 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NANOG {3.1.2.12} | ||||||||
| HGNC | HGNC:20857 | ||||||||
| EntrezGene | GeneID:79923 (SSTAR profile) | ||||||||
| UniProt ID | NANOG_HUMAN | ||||||||
| UniProt AC | Q9H9S0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NANOG expression | ||||||||
| ReMap ChIP-seq dataset list | NANOG datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 163.0 | 128.0 | 166.0 | 43.0 |
| 02 | 302.0 | 19.0 | 157.0 | 22.0 |
| 03 | 73.0 | 113.0 | 287.0 | 27.0 |
| 04 | 13.0 | 432.0 | 7.0 | 48.0 |
| 05 | 121.0 | 370.0 | 3.0 | 6.0 |
| 06 | 478.0 | 7.0 | 3.0 | 12.0 |
| 07 | 9.0 | 2.0 | 8.0 | 481.0 |
| 08 | 0.0 | 313.0 | 5.0 | 182.0 |
| 09 | 402.0 | 22.0 | 9.0 | 67.0 |
| 10 | 227.0 | 86.0 | 145.0 | 42.0 |
| 11 | 102.0 | 163.0 | 164.0 | 71.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.263 | 0.023 | 0.281 | -1.044 |
| 02 | 0.875 | -1.818 | 0.225 | -1.681 |
| 03 | -0.529 | -0.1 | 0.824 | -1.489 |
| 04 | -2.163 | 1.231 | -2.694 | -0.938 |
| 05 | -0.032 | 1.077 | -3.325 | -2.819 |
| 06 | 1.332 | -2.694 | -3.325 | -2.234 |
| 07 | -2.484 | -3.573 | -2.584 | 1.338 |
| 08 | -4.4 | 0.91 | -2.961 | 0.372 |
| 09 | 1.16 | -1.681 | -2.484 | -0.613 |
| 10 | 0.591 | -0.368 | 0.147 | -1.067 |
| 11 | -0.201 | 0.263 | 0.269 | -0.556 |