Model info
Transcription factorNanog
ModelNANOG_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusbbYWTTSWnWTKYWRAd
Best auROC (human)0.9138255698355989
Best auROC (mouse)0.9385531747250623
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)38
Aligned words500
TF familyNK-related factors{3.1.2}
TF subfamilyNANOG{3.1.2.12}
MGI1919200
EntrezGene71950
UniProt IDNANOG_MOUSE
UniProt ACQ80Z64
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.78421
0.0005 6.67051
0.0001 8.47281
GTEx tissue expression atlas Nanog expression
ReMap ChIP-seq dataset list Nanog datasets
Motifs in JASPAR
PCM
ACGT
0151.0118.0125.0206.0
0221.0267.088.0124.0
0333.0265.015.0187.0
04197.09.09.0285.0
056.010.014.0470.0
0619.04.019.0458.0
0726.0132.0302.040.0
08114.023.019.0344.0
0985.0130.0103.0182.0
10311.025.041.0123.0
1120.011.022.0447.0
1211.013.0325.0151.0
1323.0271.061.0145.0
14272.031.017.0180.0
15332.025.092.051.0
16406.012.026.056.0
1798.043.077.0282.0
PWM
ACGT
01-0.879-0.0570.00.495
02-1.7250.752-0.346-0.008
03-1.2980.745-2.0340.399
040.45-2.484-2.4840.817
05-2.819-2.394-2.0961.315
06-1.818-3.126-1.8181.29
07-1.5250.0540.875-1.114
08-0.091-1.64-1.8181.004
09-0.380.039-0.1910.372
100.904-1.561-1.09-0.016
11-1.77-2.311-1.6811.265
12-2.311-2.1630.9480.187
13-1.640.767-0.7050.147
140.771-1.358-1.920.361
150.969-1.561-0.302-0.879
161.17-2.234-1.525-0.788
17-0.24-1.044-0.4770.807