Model info
Transcription factorNanog
ModelNANOG_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusbbYWTTSWnWTKYWRAd
Best auROC (human)0.914
Best auROC (mouse)0.939
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)38
Aligned words500
TF familyNK-related factors {3.1.2}
TF subfamilyNANOG {3.1.2.12}
MGIMGI:1919200
EntrezGeneGeneID:71950
(SSTAR profile)
UniProt IDNANOG_MOUSE
UniProt ACQ80Z64
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.78946
0.0005 6.667260000000001
0.0001 8.47261
GTEx tissue expression atlas Nanog expression
Motifs in JASPAR
PCM
ACGT
0151.0118.0125.0206.0
0221.0267.088.0124.0
0333.0265.015.0187.0
04197.09.09.0285.0
056.010.014.0470.0
0619.04.019.0458.0
0726.0132.0302.040.0
08114.023.019.0344.0
0985.0130.0103.0182.0
10311.025.041.0123.0
1120.011.022.0447.0
1211.013.0325.0151.0
1323.0271.061.0145.0
14272.031.017.0180.0
15332.025.092.051.0
16406.012.026.056.0
1798.043.077.0282.0
PWM
ACGT
01-0.879-0.0570.00.495
02-1.7250.752-0.346-0.008
03-1.2980.745-2.0340.399
040.45-2.484-2.4840.817
05-2.819-2.394-2.0961.315
06-1.818-3.126-1.8181.29
07-1.5250.0540.875-1.114
08-0.091-1.64-1.8181.004
09-0.380.039-0.1910.372
100.904-1.561-1.09-0.016
11-1.77-2.311-1.6811.265
12-2.311-2.1630.9480.187
13-1.640.767-0.7050.147
140.771-1.358-1.920.361
150.969-1.561-0.302-0.879
161.17-2.234-1.525-0.788
17-0.24-1.044-0.4770.807