Model info
Transcription factorNanog
ModelNANOG_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusvRSCCATYAvn
Best auROC (human)0.769
Best auROC (mouse)0.825
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)38
Aligned words500
TF familyNK-related factors {3.1.2}
TF subfamilyNANOG {3.1.2.12}
MGIMGI:1919200
EntrezGeneGeneID:71950
(SSTAR profile)
UniProt IDNANOG_MOUSE
UniProt ACQ80Z64
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.39578
0.0005 6.20068
0.0001 7.737019999999999
GTEx tissue expression atlas Nanog expression
Motifs in JASPAR
PCM
ACGT
01163.0128.0166.043.0
02302.019.0157.022.0
0373.0113.0287.027.0
0413.0432.07.048.0
05121.0370.03.06.0
06478.07.03.012.0
079.02.08.0481.0
080.0313.05.0182.0
09402.022.09.067.0
10227.086.0145.042.0
11102.0163.0164.071.0
PWM
ACGT
010.2630.0230.281-1.044
020.875-1.8180.225-1.681
03-0.529-0.10.824-1.489
04-2.1631.231-2.694-0.938
05-0.0321.077-3.325-2.819
061.332-2.694-3.325-2.234
07-2.484-3.573-2.5841.338
08-4.40.91-2.9610.372
091.16-1.681-2.484-0.613
100.591-0.3680.147-1.067
11-0.2010.2630.269-0.556