Model info
Transcription factorNanog
ModelNANOG_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusvRSCCATYAvn
Best auROC (human)0.769356651821562
Best auROC (mouse)0.824749269669531
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)38
Aligned words500
TF familyNK-related factors{3.1.2}
TF subfamilyNANOG{3.1.2.12}
MGI1919200
EntrezGene71950
UniProt IDNANOG_MOUSE
UniProt ACQ80Z64
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.39291
0.0005 6.20331
0.0001 7.73954
GTEx tissue expression atlas Nanog expression
ReMap ChIP-seq dataset list Nanog datasets
Motifs in JASPAR
PCM
ACGT
01163.0128.0166.043.0
02302.019.0157.022.0
0373.0113.0287.027.0
0413.0432.07.048.0
05121.0370.03.06.0
06478.07.03.012.0
079.02.08.0481.0
080.0313.05.0182.0
09402.022.09.067.0
10227.086.0145.042.0
11102.0163.0164.071.0
PWM
ACGT
010.2630.0230.281-1.044
020.875-1.8180.225-1.681
03-0.529-0.10.824-1.489
04-2.1631.231-2.694-0.938
05-0.0321.077-3.325-2.819
061.332-2.694-3.325-2.234
07-2.484-3.573-2.5841.338
08-4.40.91-2.9610.372
091.16-1.681-2.484-0.613
100.591-0.3680.147-1.067
11-0.2010.2630.269-0.556