Model info
Transcription factorNanog
ModelNANOG_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusvRSCCATYAvn
Best auROC (human)0.769356651821562
Best auROC (mouse)0.824749269669531
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)38
Aligned words500
TF familyNK-related factors{3.1.2}
TF subfamilyNANOG{3.1.2.12}
MGI1919200
EntrezGene71950
UniProt IDNANOG_MOUSE
UniProt ACQ80Z64
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.39291
0.0005 6.20331
0.0001 7.73954
GTEx tissue expression atlas Nanog expression
Motifs in JASPAR
PCM
ACGT
01163.0128.0166.043.0
02302.019.0157.022.0
0373.0113.0287.027.0
0413.0432.07.048.0
05121.0370.03.06.0
06478.07.03.012.0
079.02.08.0481.0
080.0313.05.0182.0
09402.022.09.067.0
10227.086.0145.042.0
11102.0163.0164.071.0
PWM
ACGT
010.2630.0230.281-1.044
020.875-1.8180.225-1.681
03-0.529-0.10.824-1.489
04-2.1631.231-2.694-0.938
05-0.0321.077-3.325-2.819
061.332-2.694-3.325-2.234
07-2.484-3.573-2.5841.338
08-4.40.91-2.9610.372
091.16-1.681-2.484-0.613
100.591-0.3680.147-1.067
11-0.2010.2630.269-0.556