Model info
Transcription factorNEUROD1
ModelNDF1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnvnRRCAGATGGbn
Best auROC (human)0.9492699247330988
Best auROC (mouse)0.9599145217403671
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)2
Aligned words507
TF familyTal-related factors{1.2.3}
TF subfamilyNeurogenin / Atonal-like factors{1.2.3.4}
HGNC7762
EntrezGene4760
UniProt IDNDF1_HUMAN
UniProt ACQ13562
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.81011
0.0005 9.30161
0.0001 14.95441
GTEx tissue expression atlas NEUROD1 expression
ReMap ChIP-seq dataset list NEUROD1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0118.014.062.015.049.030.022.024.042.025.083.028.014.014.048.012.0
0223.022.059.019.022.019.07.035.045.039.060.071.012.013.040.014.0
0337.06.057.02.062.06.025.00.084.022.050.010.037.01.0101.00.0
04106.032.082.00.026.08.01.00.0136.057.038.02.01.07.04.00.0
0510.0258.01.00.01.0103.00.00.00.0123.02.00.01.01.00.00.0
0612.00.00.00.0484.00.00.01.03.00.00.00.00.00.00.00.0
072.00.0484.013.00.00.00.00.00.00.00.00.00.00.01.00.0
081.00.01.00.00.00.00.00.0361.0101.023.00.012.00.01.00.0
092.00.00.0372.00.00.00.0101.00.00.00.025.00.00.00.00.0
100.00.02.00.00.00.00.00.00.00.00.00.01.00.0495.02.0
110.00.01.00.00.00.00.00.03.025.0385.084.00.00.02.00.0
120.02.00.01.01.05.00.019.034.0172.046.0136.04.020.011.049.0
136.010.020.03.077.041.022.059.011.018.010.018.030.063.089.023.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.543-0.7880.679-0.7210.445-0.04-0.346-0.260.293-0.220.969-0.108-0.788-0.7880.425-0.938
02-0.302-0.3460.63-0.49-0.346-0.49-1.4540.1120.3610.2190.6460.814-0.938-0.860.244-0.788
030.167-1.60.595-2.5840.679-1.6-0.22-4.40.981-0.3460.465-1.1140.167-3.1261.165-4.4
041.2130.0230.957-4.4-0.181-1.328-3.126-4.41.4610.5950.193-2.584-3.126-1.454-1.975-4.4
05-1.1142.1-3.126-4.4-3.1261.184-4.4-4.4-4.41.361-2.584-4.4-3.126-3.126-4.4-4.4
06-0.938-4.4-4.4-4.42.729-4.4-4.4-3.126-2.234-4.4-4.4-4.4-4.4-4.4-4.4-4.4
07-2.584-4.42.729-0.86-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4
08-3.126-4.4-3.126-4.4-4.4-4.4-4.4-4.42.4361.165-0.302-4.4-0.938-4.4-3.126-4.4
09-2.584-4.4-4.42.466-4.4-4.4-4.41.165-4.4-4.4-4.4-0.22-4.4-4.4-4.4-4.4
10-4.4-4.4-2.584-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.42.751-2.584
11-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-2.234-0.222.50.981-4.4-4.4-2.584-4.4
12-4.4-2.584-4.4-3.126-3.126-1.77-4.4-0.490.0831.6950.3831.461-1.975-0.439-1.0220.445
13-1.6-1.114-0.439-2.2340.8940.269-0.3460.63-1.022-0.543-1.114-0.543-0.040.6951.039-0.302