Model info
Transcription factorNEUROD1
ModelNDF1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusRRCAGMTGGb
Best auROC (human)0.9457481014030519
Best auROC (mouse)0.9521375814100388
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)2
Aligned words503
TF familyTal-related factors{1.2.3}
TF subfamilyNeurogenin / Atonal-like factors{1.2.3.4}
HGNC7762
EntrezGene4760
UniProt IDNDF1_HUMAN
UniProt ACQ13562
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.94229
0.0005 5.05856
0.0001 7.5242
GTEx tissue expression atlas NEUROD1 expression
ReMap ChIP-seq dataset list NEUROD1 datasets
Motifs in JASPAR
PCM
ACGT
01217.036.0235.012.0
02262.0104.0133.01.0
0311.0488.01.00.0
04499.00.00.01.0
051.00.0487.012.0
06365.0110.025.00.0
074.00.00.0496.0
081.00.0496.03.0
094.024.0384.088.0
1038.0198.063.0201.0
PWM
ACGT
010.546-1.2150.626-2.234
020.734-0.1810.061-3.903
03-2.3111.353-3.903-4.4
041.375-4.4-4.4-3.903
05-3.903-4.41.351-2.234
061.063-0.126-1.561-4.4
07-3.126-4.4-4.41.369
08-3.903-4.41.369-3.325
09-3.126-1.61.114-0.346
10-1.1630.455-0.6730.47