Model info
Transcription factorNeurod1
ModelNDF1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusRRCAGMTGGb
Best auROC (human)0.946
Best auROC (mouse)0.952
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)2
Aligned words503
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
MGIMGI:1339708
EntrezGeneGeneID:18012
(SSTAR profile)
UniProt IDNDF1_MOUSE
UniProt ACQ60867
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.081664999999999
0.0005 5.230935000000001
0.0001 7.808705
GTEx tissue expression atlas Neurod1 expression
Motifs in JASPAR
PCM
ACGT
01217.036.0235.012.0
02262.0104.0133.01.0
0311.0488.01.00.0
04499.00.00.01.0
051.00.0487.012.0
06365.0110.025.00.0
074.00.00.0496.0
081.00.0496.03.0
094.024.0384.088.0
1038.0198.063.0201.0
PWM
ACGT
010.546-1.2150.626-2.234
020.734-0.1810.061-3.903
03-2.3111.353-3.903-4.4
041.375-4.4-4.4-3.903
05-3.903-4.41.351-2.234
061.063-0.126-1.561-4.4
07-3.126-4.4-4.41.369
08-3.903-4.41.369-3.325
09-3.126-1.61.114-0.346
10-1.1630.455-0.6730.47