Model info
Transcription factorNEUROD2
(GeneCards)
ModelNDF2_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
B
Motif rank
0
ConsensusdvvvnRRCAGATGGn
Best auROC (human)0.619
Best auROC (mouse)0.97
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)21
Aligned words560
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
HGNCHGNC:7763
EntrezGeneGeneID:4761
(SSTAR profile)
UniProt IDNDF2_HUMAN
UniProt ACQ15784
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.799010000000001
0.0005 10.258510000000001
0.0001 15.04686
GTEx tissue expression atlas NEUROD2 expression
ReMap ChIP-seq dataset list NEUROD2 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0128.028.053.09.015.023.012.022.043.051.086.025.013.018.047.027.0
0222.021.048.08.060.036.010.014.057.057.065.019.019.010.047.07.0
0324.026.092.016.051.014.027.032.051.018.083.018.06.014.022.06.0
0428.020.058.026.024.014.09.025.060.048.072.044.013.014.037.08.0
0543.07.071.04.064.08.014.010.092.019.059.06.015.05.080.03.0
0680.030.0104.00.025.09.05.00.0129.033.061.01.014.07.01.01.0
071.0247.00.00.00.079.00.00.00.0170.00.01.00.02.00.00.0
081.00.00.00.0498.00.00.00.00.00.00.00.01.00.00.00.0
090.010.0463.027.00.00.00.00.00.00.00.00.00.00.00.00.0
100.00.00.00.09.00.01.00.0335.0116.011.01.023.02.02.00.0
1130.04.00.0333.018.01.00.099.00.00.00.014.00.00.00.01.0
120.00.048.00.00.00.05.00.00.00.00.00.01.00.0419.027.0
130.00.01.00.00.00.00.00.03.046.0401.022.00.00.025.02.0
140.02.01.00.010.019.02.015.067.0124.0114.0122.03.014.05.02.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.108-0.1080.523-1.215-0.721-0.302-0.938-0.3460.3160.4851.004-0.22-0.86-0.5430.404-0.144
02-0.346-0.3920.425-1.3280.6460.14-1.114-0.7880.5950.5950.726-0.49-0.49-1.1140.404-1.454
03-0.26-0.1811.072-0.6580.485-0.788-0.1440.0230.485-0.5430.969-0.543-1.6-0.788-0.346-1.6
04-0.108-0.4390.613-0.181-0.26-0.788-1.215-0.220.6460.4250.8280.339-0.86-0.7880.167-1.328
050.316-1.4540.814-1.9750.711-1.328-0.788-1.1141.072-0.490.63-1.6-0.721-1.770.932-2.234
060.932-0.041.194-4.4-0.22-1.215-1.77-4.41.4080.0540.663-3.126-0.788-1.454-3.126-3.126
07-3.1262.057-4.4-4.4-4.40.92-4.4-4.4-4.41.684-4.4-3.126-4.4-2.584-4.4-4.4
08-3.126-4.4-4.4-4.42.757-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4
09-4.4-1.1142.684-0.144-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
10-4.4-4.4-4.4-4.4-1.215-4.4-3.126-4.42.3611.303-1.022-3.126-0.302-2.584-2.584-4.4
11-0.04-1.975-4.42.355-0.543-3.126-4.41.145-4.4-4.4-4.4-0.788-4.4-4.4-4.4-3.126
12-4.4-4.40.425-4.4-4.4-4.4-1.77-4.4-4.4-4.4-4.4-4.4-3.126-4.42.584-0.144
13-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-2.2340.3832.541-0.346-4.4-4.4-0.22-2.584
14-4.4-2.584-3.126-4.4-1.114-0.49-2.584-0.7210.7561.3691.2851.353-2.234-0.788-1.77-2.584