Model info
Transcription factorNEUROD2
ModelNDF2_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
0
ConsensusRRCAGMTGG
Best auROC (human)0.5944901111955169
Best auROC (mouse)0.962872365008949
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)21
Aligned words502
TF familyTal-related factors{1.2.3}
TF subfamilyNeurogenin / Atonal-like factors{1.2.3.4}
HGNC7763
EntrezGene4761
UniProt IDNDF2_HUMAN
UniProt ACQ15784
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.41933
0.0005 5.53264
0.0001 7.69972
GTEx tissue expression atlas NEUROD2 expression
ReMap ChIP-seq dataset list NEUROD2 datasets
Motifs in JASPAR
PCM
ACGT
01232.050.0203.015.0
02236.049.0213.02.0
034.0495.01.00.0
04500.00.00.00.0
050.011.0477.012.0
06339.0140.016.05.0
0756.03.03.0438.0
080.00.0476.024.0
093.067.0417.013.0
PWM
ACGT
010.613-0.8980.48-2.034
020.63-0.9180.528-3.573
03-3.1261.367-3.903-4.4
041.377-4.4-4.4-4.4
05-4.4-2.3111.33-2.234
060.990.112-1.975-2.961
07-0.788-3.325-3.3251.245
08-4.4-4.41.328-1.6
09-3.325-0.6131.196-2.163