Transcription factor | Nfatc1 | ||||||||
Model | NFAC1_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 18 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | vWGGAARvdnWKWvWSRn | ||||||||
Best auROC (human) | 0.726 | ||||||||
Best auROC (mouse) | 0.963 | ||||||||
Peak sets in benchmark (human) | 7 | ||||||||
Peak sets in benchmark (mouse) | 8 | ||||||||
Aligned words | 508 | ||||||||
TF family | NFAT-related factors {6.1.3} | ||||||||
TF subfamily | NFATc1 {6.1.3.0.1} | ||||||||
MGI | MGI:102469 | ||||||||
EntrezGene | |||||||||
UniProt ID | NFAC1_MOUSE | ||||||||
UniProt AC | O88942 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nfatc1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 36.0 | 21.0 | 24.0 | 132.0 | 22.0 | 9.0 | 1.0 | 56.0 | 30.0 | 5.0 | 10.0 | 71.0 | 18.0 | 13.0 | 13.0 | 39.0 |
02 | 4.0 | 0.0 | 100.0 | 2.0 | 8.0 | 0.0 | 40.0 | 0.0 | 2.0 | 1.0 | 44.0 | 1.0 | 2.0 | 1.0 | 292.0 | 3.0 |
03 | 0.0 | 0.0 | 16.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 4.0 | 2.0 | 470.0 | 0.0 | 0.0 | 1.0 | 5.0 | 0.0 |
04 | 2.0 | 0.0 | 2.0 | 0.0 | 2.0 | 1.0 | 0.0 | 0.0 | 453.0 | 9.0 | 30.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
05 | 411.0 | 4.0 | 40.0 | 2.0 | 9.0 | 1.0 | 0.0 | 0.0 | 22.0 | 4.0 | 5.0 | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 |
06 | 329.0 | 35.0 | 46.0 | 32.0 | 8.0 | 1.0 | 0.0 | 1.0 | 33.0 | 4.0 | 8.0 | 0.0 | 2.0 | 0.0 | 0.0 | 1.0 |
07 | 175.0 | 65.0 | 101.0 | 31.0 | 26.0 | 4.0 | 4.0 | 6.0 | 30.0 | 5.0 | 18.0 | 1.0 | 10.0 | 6.0 | 8.0 | 10.0 |
08 | 102.0 | 15.0 | 27.0 | 97.0 | 35.0 | 6.0 | 0.0 | 39.0 | 67.0 | 11.0 | 12.0 | 41.0 | 12.0 | 8.0 | 12.0 | 16.0 |
09 | 76.0 | 51.0 | 72.0 | 17.0 | 13.0 | 9.0 | 7.0 | 11.0 | 21.0 | 5.0 | 17.0 | 8.0 | 53.0 | 48.0 | 58.0 | 34.0 |
10 | 7.0 | 4.0 | 13.0 | 139.0 | 11.0 | 6.0 | 3.0 | 93.0 | 32.0 | 9.0 | 4.0 | 109.0 | 5.0 | 3.0 | 14.0 | 48.0 |
11 | 7.0 | 6.0 | 36.0 | 6.0 | 5.0 | 7.0 | 6.0 | 4.0 | 3.0 | 6.0 | 15.0 | 10.0 | 8.0 | 7.0 | 331.0 | 43.0 |
12 | 15.0 | 2.0 | 6.0 | 0.0 | 17.0 | 2.0 | 2.0 | 5.0 | 331.0 | 9.0 | 19.0 | 29.0 | 36.0 | 7.0 | 7.0 | 13.0 |
13 | 49.0 | 126.0 | 205.0 | 19.0 | 8.0 | 3.0 | 6.0 | 3.0 | 2.0 | 12.0 | 13.0 | 7.0 | 5.0 | 7.0 | 32.0 | 3.0 |
14 | 15.0 | 2.0 | 6.0 | 41.0 | 19.0 | 7.0 | 9.0 | 113.0 | 33.0 | 22.0 | 16.0 | 185.0 | 4.0 | 4.0 | 9.0 | 15.0 |
15 | 8.0 | 35.0 | 22.0 | 6.0 | 10.0 | 11.0 | 3.0 | 11.0 | 4.0 | 16.0 | 17.0 | 3.0 | 46.0 | 254.0 | 31.0 | 23.0 |
16 | 49.0 | 6.0 | 12.0 | 1.0 | 281.0 | 13.0 | 7.0 | 15.0 | 35.0 | 6.0 | 14.0 | 18.0 | 8.0 | 12.0 | 18.0 | 5.0 |
17 | 31.0 | 136.0 | 107.0 | 99.0 | 23.0 | 5.0 | 1.0 | 8.0 | 7.0 | 7.0 | 22.0 | 15.0 | 8.0 | 9.0 | 11.0 | 11.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.14 | -0.392 | -0.26 | 1.431 | -0.346 | -1.215 | -3.126 | 0.578 | -0.04 | -1.77 | -1.114 | 0.814 | -0.543 | -0.86 | -0.86 | 0.219 |
02 | -1.975 | -4.4 | 1.155 | -2.584 | -1.328 | -4.4 | 0.244 | -4.4 | -2.584 | -3.126 | 0.339 | -3.126 | -2.584 | -3.126 | 2.224 | -2.234 |
03 | -4.4 | -4.4 | -0.658 | -4.4 | -4.4 | -4.4 | -2.584 | -4.4 | -1.975 | -2.584 | 2.699 | -4.4 | -4.4 | -3.126 | -1.77 | -4.4 |
04 | -2.584 | -4.4 | -2.584 | -4.4 | -2.584 | -3.126 | -4.4 | -4.4 | 2.662 | -1.215 | -0.04 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 |
05 | 2.565 | -1.975 | 0.244 | -2.584 | -1.215 | -3.126 | -4.4 | -4.4 | -0.346 | -1.975 | -1.77 | -3.126 | -4.4 | -3.126 | -4.4 | -4.4 |
06 | 2.343 | 0.112 | 0.383 | 0.023 | -1.328 | -3.126 | -4.4 | -3.126 | 0.054 | -1.975 | -1.328 | -4.4 | -2.584 | -4.4 | -4.4 | -3.126 |
07 | 1.713 | 0.726 | 1.165 | -0.008 | -0.181 | -1.975 | -1.975 | -1.6 | -0.04 | -1.77 | -0.543 | -3.126 | -1.114 | -1.6 | -1.328 | -1.114 |
08 | 1.174 | -0.721 | -0.144 | 1.124 | 0.112 | -1.6 | -4.4 | 0.219 | 0.756 | -1.022 | -0.938 | 0.269 | -0.938 | -1.328 | -0.938 | -0.658 |
09 | 0.881 | 0.485 | 0.828 | -0.599 | -0.86 | -1.215 | -1.454 | -1.022 | -0.392 | -1.77 | -0.599 | -1.328 | 0.523 | 0.425 | 0.613 | 0.083 |
10 | -1.454 | -1.975 | -0.86 | 1.483 | -1.022 | -1.6 | -2.234 | 1.082 | 0.023 | -1.215 | -1.975 | 1.241 | -1.77 | -2.234 | -0.788 | 0.425 |
11 | -1.454 | -1.6 | 0.14 | -1.6 | -1.77 | -1.454 | -1.6 | -1.975 | -2.234 | -1.6 | -0.721 | -1.114 | -1.328 | -1.454 | 2.349 | 0.316 |
12 | -0.721 | -2.584 | -1.6 | -4.4 | -0.599 | -2.584 | -2.584 | -1.77 | 2.349 | -1.215 | -0.49 | -0.074 | 0.14 | -1.454 | -1.454 | -0.86 |
13 | 0.445 | 1.385 | 1.871 | -0.49 | -1.328 | -2.234 | -1.6 | -2.234 | -2.584 | -0.938 | -0.86 | -1.454 | -1.77 | -1.454 | 0.023 | -2.234 |
14 | -0.721 | -2.584 | -1.6 | 0.269 | -0.49 | -1.454 | -1.215 | 1.276 | 0.054 | -0.346 | -0.658 | 1.768 | -1.975 | -1.975 | -1.215 | -0.721 |
15 | -1.328 | 0.112 | -0.346 | -1.6 | -1.114 | -1.022 | -2.234 | -1.022 | -1.975 | -0.658 | -0.599 | -2.234 | 0.383 | 2.084 | -0.008 | -0.302 |
16 | 0.445 | -1.6 | -0.938 | -3.126 | 2.185 | -0.86 | -1.454 | -0.721 | 0.112 | -1.6 | -0.788 | -0.543 | -1.328 | -0.938 | -0.543 | -1.77 |
17 | -0.008 | 1.461 | 1.222 | 1.145 | -0.302 | -1.77 | -3.126 | -1.328 | -1.454 | -1.454 | -0.346 | -0.721 | -1.328 | -1.215 | -1.022 | -1.022 |