Model info
Transcription factorNfia
ModelNFIA_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
C
Motif rank
0
ConsensushTGGShnGnhKCCWd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words233
TF familyNuclear factor 1{7.1.2}
TF subfamilyNF-1A (NF-IA){7.1.2.0.1}
MGI108056
EntrezGene18027
UniProt IDNFIA_MOUSE
UniProt ACQ02780
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.89261
0.0005 5.71321
0.0001 7.38811
GTEx tissue expression atlas Nfia expression
Motifs in JASPAR
PCM
ACGT
0133.86749.84425.195124.094
027.8117.10116.129201.959
0310.6512.029204.59715.723
0415.3186.898199.2211.564
0525.867167.87526.7812.477
0696.74358.25128.5349.477
0750.0676.2848.23358.427
0885.6310.423146.6930.254
0953.6650.8280.23548.284
1070.530.48223.686108.332
1117.57516.154171.60327.668
1213.897189.27914.65815.165
1313.289195.46713.3910.854
14181.51914.91216.38320.187
15102.67920.92282.69626.704
PWM
ACGT
01-0.526-0.152-0.8090.744
02-1.872-1.952-1.2261.227
03-1.602-2.8671.24-1.25
04-1.274-1.9761.213-1.529
05-0.7841.043-0.751-1.46
060.4980.0-0.69-0.159
07-0.1480.264-0.1840.003
080.378-3.5080.91-3.608
09-0.08-0.1330.314-0.183
100.187-0.627-0.8670.61
11-1.147-1.2251.065-0.72
12-1.3631.163-1.314-1.283
13-1.4031.194-1.396-1.585
141.121-1.298-1.212-1.018
150.557-0.9840.344-0.753