Model info
Transcription factorNfia
ModelNFIA_MOUSE.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length7
Quality
D
Motif rank
1
ConsensushYTGGCd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words267
TF familyNuclear factor 1{7.1.2}
TF subfamilyNF-1A (NF-IA){7.1.2.0.1}
MGI108056
EntrezGene18027
UniProt IDNFIA_MOUSE
UniProt ACQ02780
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.65756
0.0005 6.47401
0.0001 7.33551
GTEx tissue expression atlas Nfia expression
ReMap ChIP-seq dataset list Nfia datasets
Motifs in JASPAR
PCM
ACGT
0166.079104.60942.55651.757
0215.36345.5432.356201.739
031.9460.71713.929248.408
043.4820.0255.276.247
057.6813.38253.4270.512
0614.031234.63312.3933.943
07118.27333.34637.25776.124
PWM
ACGT
01-0.0030.449-0.431-0.241
02-1.395-0.365-2.8921.1
03-3.008-3.467-1.4851.306
04-2.63-3.8811.334-2.181
05-2.009-2.6511.326-3.569
06-1.4781.25-1.591-2.539
070.57-0.666-0.560.136