Model info
Transcription factorNFIC
ModelNFIC_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusbbTTGGCWb
Best auROC (human)0.9324213129366734
Best auROC (mouse)0.8310862824314239
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)1
Aligned words500
TF familyNuclear factor 1{7.1.2}
TF subfamilyNF-1C (NF-IC){7.1.2.0.3}
HGNC7786
EntrezGene4782
UniProt IDNFIC_HUMAN
UniProt ACP08651
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.90889
0.0005 6.83462
0.0001 7.91699
GTEx tissue expression atlas NFIC expression
ReMap ChIP-seq dataset list NFIC datasets
Motifs in JASPAR
PCM
ACGT
0182.096.083.0239.0
0216.0253.079.0152.0
030.0187.01.0312.0
040.00.016.0484.0
050.00.0497.03.0
061.01.0495.03.0
0716.0480.04.00.0
08299.045.02.0154.0
0977.0139.0195.089.0
PWM
ACGT
01-0.415-0.26-0.4030.642
02-1.9750.699-0.4520.193
03-4.40.399-3.9030.907
04-4.4-4.4-1.9751.345
05-4.4-4.41.371-3.325
06-3.903-3.9031.367-3.325
07-1.9751.336-3.126-4.4
080.865-1.0-3.5730.206
09-0.4770.1050.44-0.335