Retracted!
Do not use this motif!
Do not use this motif!
Model info
| Transcription factor | NFKB1 (GeneCards) | ||||||||
| Model | NFKB1_HUMAN.H11MO.0.A RETRACTED!!! | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 8 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RGGGAARd | ||||||||
| Best auROC (human) | 0.94 | ||||||||
| Best auROC (mouse) | 0.897 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 16 | ||||||||
| Aligned words | 265 | ||||||||
| TF family | NF-kappaB-related factors {6.1.1} | ||||||||
| TF subfamily | NF-kappaB p50 subunit-like factors {6.1.1.1} | ||||||||
| HGNC | HGNC:7794 | ||||||||
| EntrezGene | GeneID:4790 (SSTAR profile) | ||||||||
| UniProt ID | NFKB1_HUMAN | ||||||||
| UniProt AC | P19838 (TFClass) | ||||||||
| Comment | Retracted motif! | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NFKB1 expression | ||||||||
| ReMap ChIP-seq dataset list | NFKB1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 162.0 | 5.0 | 65.0 | 32.0 |
| 02 | 9.0 | 0.0 | 245.0 | 10.0 |
| 03 | 51.0 | 0.0 | 213.0 | 0.0 |
| 04 | 1.0 | 3.0 | 258.0 | 2.0 |
| 05 | 260.0 | 1.0 | 0.0 | 3.0 |
| 06 | 213.0 | 3.0 | 39.0 | 9.0 |
| 07 | 178.0 | 1.0 | 53.0 | 32.0 |
| 08 | 36.0 | 25.0 | 95.0 | 108.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.886 | -2.355 | -0.015 | -0.702 |
| 02 | -1.869 | -3.878 | 1.296 | -1.777 |
| 03 | -0.252 | -3.878 | 1.157 | -3.878 |
| 04 | -3.338 | -2.73 | 1.348 | -2.989 |
| 05 | 1.355 | -3.338 | -3.878 | -2.73 |
| 06 | 1.157 | -2.73 | -0.512 | -1.869 |
| 07 | 0.979 | -3.338 | -0.214 | -0.702 |
| 08 | -0.589 | -0.937 | 0.358 | 0.484 |