Model info
Transcription factorNFKB1
ModelNFKB1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
A
Motif rank
0
ConsensusRGGGAARd
Best auROC (human)0.939899255852971
Best auROC (mouse)0.8974733457311295
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)16
Aligned words265
TF familyNF-kappaB-related factors{6.1.1}
TF subfamilyNF-kappaB p50 subunit-like factors{6.1.1.1}
HGNC7794
EntrezGene4790
UniProt IDNFKB1_HUMAN
UniProt ACP19838
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.91001
0.0005 6.85701
0.0001 7.64905
GTEx tissue expression atlas NFKB1 expression
ReMap ChIP-seq dataset list NFKB1 datasets
Motifs in JASPAR
PCM
ACGT
01162.05.065.032.0
029.00.0245.010.0
0351.00.0213.00.0
041.03.0258.02.0
05260.01.00.03.0
06213.03.039.09.0
07178.01.053.032.0
0836.025.095.0108.0
PWM
ACGT
010.886-2.355-0.015-0.702
02-1.869-3.8781.296-1.777
03-0.252-3.8781.157-3.878
04-3.338-2.731.348-2.989
051.355-3.338-3.878-2.73
061.157-2.73-0.512-1.869
070.979-3.338-0.214-0.702
08-0.589-0.9370.3580.484