Model info
Transcription factorNEUROG2
ModelNGN2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
D
Motif rank
0
ConsensusvbRRCAGATGKb
Best auROC (human)
Best auROC (mouse)0.9766040197220972
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words206
TF familyTal-related factors{1.2.3}
TF subfamilyNeurogenin / Atonal-like factors{1.2.3.4}
HGNC13805
EntrezGene63973
UniProt IDNGN2_HUMAN
UniProt ACQ9H2A3
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.18584
0.0005 5.24422
0.0001 7.46971
GTEx tissue expression atlas NEUROG2 expression
ReMap ChIP-seq dataset list NEUROG2 datasets
Motifs in JASPAR
PCM
ACGT
0155.036.091.024.0
0224.053.082.047.0
03119.018.059.010.0
0489.027.090.00.0
051.0202.01.02.0
06206.00.00.00.0
070.00.0200.06.0
08159.046.01.00.0
092.00.01.0203.0
101.01.0197.07.0
118.021.0150.027.0
1215.084.045.062.0
PWM
ACGT
010.064-0.3470.558-0.735
02-0.7350.0280.456-0.089
030.823-1.0050.133-1.539
040.536-0.6230.547-3.68
05-3.121.348-3.12-2.764
061.367-3.68-3.68-3.68
07-3.68-3.681.338-1.975
081.11-0.11-3.12-3.68
09-2.764-3.68-3.121.353
10-3.12-3.121.323-1.847
11-1.734-0.8611.052-0.623
12-1.1740.479-0.1310.181