Transcription factor | Neurog2 | ||||||||
Model | NGN2_MOUSE.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 13 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | vvnRRCAGATGGb | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.984 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 4 | ||||||||
Aligned words | 513 | ||||||||
TF family | Tal-related factors {1.2.3} | ||||||||
TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
MGI | MGI:109619 | ||||||||
EntrezGene | GeneID:11924 (SSTAR profile) | ||||||||
UniProt ID | NGN2_MOUSE | ||||||||
UniProt AC | P70447 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Neurog2 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 38.0 | 24.0 | 75.0 | 13.0 | 33.0 | 44.0 | 18.0 | 22.0 | 43.0 | 29.0 | 80.0 | 21.0 | 6.0 | 16.0 | 29.0 | 8.0 |
02 | 19.0 | 25.0 | 50.0 | 26.0 | 31.0 | 16.0 | 18.0 | 48.0 | 39.0 | 45.0 | 68.0 | 50.0 | 7.0 | 11.0 | 38.0 | 8.0 |
03 | 35.0 | 5.0 | 53.0 | 3.0 | 72.0 | 3.0 | 16.0 | 6.0 | 102.0 | 13.0 | 51.0 | 8.0 | 31.0 | 8.0 | 91.0 | 2.0 |
04 | 103.0 | 21.0 | 116.0 | 0.0 | 22.0 | 2.0 | 5.0 | 0.0 | 89.0 | 37.0 | 84.0 | 1.0 | 5.0 | 9.0 | 5.0 | 0.0 |
05 | 1.0 | 217.0 | 0.0 | 1.0 | 0.0 | 69.0 | 0.0 | 0.0 | 0.0 | 210.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 | 495.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 3.0 | 452.0 | 41.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
08 | 1.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 347.0 | 96.0 | 9.0 | 1.0 | 41.0 | 0.0 | 0.0 | 0.0 |
09 | 13.0 | 4.0 | 0.0 | 376.0 | 3.0 | 0.0 | 0.0 | 93.0 | 0.0 | 0.0 | 0.0 | 9.0 | 0.0 | 0.0 | 0.0 | 1.0 |
10 | 0.0 | 0.0 | 16.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 472.0 | 7.0 |
11 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 27.0 | 406.0 | 59.0 | 0.0 | 1.0 | 6.0 | 0.0 |
12 | 0.0 | 0.0 | 0.0 | 0.0 | 5.0 | 12.0 | 2.0 | 9.0 | 54.0 | 158.0 | 91.0 | 109.0 | 0.0 | 20.0 | 29.0 | 10.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.195 | -0.258 | 0.87 | -0.858 | 0.056 | 0.341 | -0.541 | -0.344 | 0.318 | -0.072 | 0.934 | -0.39 | -1.598 | -0.656 | -0.072 | -1.326 |
02 | -0.488 | -0.218 | 0.467 | -0.179 | -0.006 | -0.656 | -0.541 | 0.427 | 0.221 | 0.363 | 0.773 | 0.467 | -1.452 | -1.02 | 0.195 | -1.326 |
03 | 0.114 | -1.768 | 0.525 | -2.232 | 0.83 | -2.232 | -0.656 | -1.598 | 1.176 | -0.858 | 0.487 | -1.326 | -0.006 | -1.326 | 1.063 | -2.582 |
04 | 1.186 | -0.39 | 1.305 | -4.398 | -0.344 | -2.582 | -1.768 | -4.398 | 1.041 | 0.169 | 0.983 | -3.124 | -1.768 | -1.213 | -1.768 | -4.398 |
05 | -3.124 | 1.929 | -4.398 | -3.124 | -4.398 | 0.787 | -4.398 | -4.398 | -4.398 | 1.897 | -4.398 | -4.398 | -4.398 | -3.124 | -4.398 | -4.398 |
06 | -3.124 | -4.398 | -4.398 | -4.398 | 2.753 | -4.398 | -2.582 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -3.124 | -4.398 | -4.398 | -4.398 |
07 | -3.124 | -2.232 | 2.662 | 0.271 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -3.124 | -3.124 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 |
08 | -3.124 | -4.398 | -4.398 | -4.398 | -1.973 | -4.398 | -4.398 | -4.398 | 2.398 | 1.116 | -1.213 | -3.124 | 0.271 | -4.398 | -4.398 | -4.398 |
09 | -0.858 | -1.973 | -4.398 | 2.478 | -2.232 | -4.398 | -4.398 | 1.084 | -4.398 | -4.398 | -4.398 | -1.213 | -4.398 | -4.398 | -4.398 | -3.124 |
10 | -4.398 | -4.398 | -0.656 | -4.398 | -4.398 | -4.398 | -1.973 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | 2.705 | -1.452 |
11 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -0.142 | 2.555 | 0.632 | -4.398 | -3.124 | -1.598 | -4.398 |
12 | -4.398 | -4.398 | -4.398 | -4.398 | -1.768 | -0.936 | -2.582 | -1.213 | 0.544 | 1.613 | 1.063 | 1.243 | -4.398 | -0.437 | -0.072 | -1.112 |