Model info
Transcription factorNKX2-1
ModelNKX21_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnbYKGAGWGbnhn
Best auROC (human)0.9378030840402483
Best auROC (mouse)0.9271972153305164
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)9
Aligned words501
TF familyNK-related factors{3.1.2}
TF subfamilyNK-2.1{3.1.2.14}
HGNC11825
EntrezGene7080
UniProt IDNKX21_HUMAN
UniProt ACP43699
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.53091
0.0005 12.396715
0.0001 15.781275
GTEx tissue expression atlas NKX2-1 expression
ReMap ChIP-seq dataset list NKX2-1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.051.058.014.012.047.03.042.08.051.026.029.011.047.050.047.0
026.09.01.019.037.027.02.0130.026.023.08.080.011.029.07.085.0
039.02.023.046.09.00.02.077.02.00.03.013.025.019.090.0180.0
040.00.045.00.02.03.016.00.04.04.0109.01.016.05.0295.00.0
0522.00.00.00.012.00.00.00.0465.00.00.00.01.00.00.00.0
061.01.0498.00.00.00.00.00.00.00.00.00.00.00.00.00.0
071.00.00.00.01.00.00.00.0113.00.030.0355.00.00.00.00.0
085.02.0108.00.00.00.00.00.03.00.027.00.031.03.0319.02.0
090.019.015.05.00.01.01.03.012.0123.0218.0101.00.01.01.00.0
103.02.04.03.033.047.04.060.049.086.048.052.012.031.020.046.0
1113.026.024.034.031.039.05.091.014.011.016.035.014.032.020.095.0
1223.019.017.013.026.021.03.058.014.010.020.021.055.047.066.087.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.9750.4850.613-0.788-0.9380.404-2.2340.293-1.3280.485-0.181-0.074-1.0220.4040.4650.404
02-1.6-1.215-3.126-0.490.167-0.144-2.5841.416-0.181-0.302-1.3280.932-1.022-0.074-1.4540.993
03-1.215-2.584-0.3020.383-1.215-4.4-2.5840.894-2.584-4.4-2.234-0.86-0.22-0.491.051.741
04-4.4-4.40.361-4.4-2.584-2.234-0.658-4.4-1.975-1.9751.241-3.126-0.658-1.772.234-4.4
05-0.346-4.4-4.4-4.4-0.938-4.4-4.4-4.42.689-4.4-4.4-4.4-3.126-4.4-4.4-4.4
06-3.126-3.1262.757-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
07-3.126-4.4-4.4-4.4-3.126-4.4-4.4-4.41.276-4.4-0.042.419-4.4-4.4-4.4-4.4
08-1.77-2.5841.231-4.4-4.4-4.4-4.4-4.4-2.234-4.4-0.144-4.4-0.008-2.2342.312-2.584
09-4.4-0.49-0.721-1.77-4.4-3.126-3.126-2.234-0.9381.3611.9321.165-4.4-3.126-3.126-4.4
10-2.234-2.584-1.975-2.2340.0540.404-1.9750.6460.4451.0040.4250.504-0.938-0.008-0.4390.383
11-0.86-0.181-0.260.083-0.0080.219-1.771.061-0.788-1.022-0.6580.112-0.7880.023-0.4391.104
12-0.302-0.49-0.599-0.86-0.181-0.392-2.2340.613-0.788-1.114-0.439-0.3920.560.4040.7411.016