Model info
Transcription factorNkx2-1
ModelNKX21_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnbWbRAGWGbbhn
Best auROC (human)0.9046104621274773
Best auROC (mouse)0.9370450861043516
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)9
Aligned words502
TF familyNK-related factors{3.1.2}
TF subfamilyNK-2.1{3.1.2.14}
MGI108067
EntrezGene21869
UniProt IDNKX21_MOUSE
UniProt ACP50220
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.19716
0.0005 12.652515000000001
0.0001 15.311074999999999
GTEx tissue expression atlas Nkx2-1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0114.038.027.021.027.051.016.033.05.043.031.031.05.059.036.043.0
026.012.012.021.032.014.02.0143.014.017.02.077.012.010.06.0100.0
037.06.013.038.06.02.02.043.02.00.02.018.033.054.0114.0140.0
048.06.034.00.031.012.019.00.036.06.088.01.023.08.0208.00.0
0598.00.00.00.032.00.00.00.0343.00.05.01.01.00.00.00.0
061.02.0469.02.00.00.00.00.00.00.05.00.00.00.01.00.0
071.00.00.00.01.00.00.01.0139.01.023.0312.01.00.00.01.0
083.01.0134.04.00.00.00.01.05.00.018.00.037.02.0265.010.0
091.030.07.07.01.00.00.02.09.0138.0169.0101.00.08.02.05.0
100.03.05.03.031.066.04.075.027.065.044.042.015.041.022.037.0
1116.026.014.017.032.063.06.074.09.032.012.022.021.039.020.077.0
1223.031.016.08.028.025.07.0100.014.013.018.07.029.060.053.048.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.7480.234-0.104-0.351-0.1040.525-0.6180.094-1.730.3560.0320.032-1.730.670.180.356
02-1.56-0.897-0.897-0.3510.064-0.748-2.5441.552-0.748-0.558-2.5440.935-0.897-1.074-1.561.195
03-1.414-1.56-0.820.234-1.56-2.544-2.5440.356-2.544-4.366-2.544-0.5020.0940.5821.3261.53
04-1.287-1.560.124-4.3660.032-0.897-0.449-4.3660.18-1.561.068-3.088-0.262-1.2871.925-4.366
051.175-4.366-4.366-4.3660.064-4.366-4.366-4.3662.425-4.366-1.73-3.088-3.088-4.366-4.366-4.366
06-3.088-2.5442.737-2.544-4.366-4.366-4.366-4.366-4.366-4.366-1.73-4.366-4.366-4.366-3.088-4.366
07-3.088-4.366-4.366-4.366-3.088-4.366-4.366-3.0881.523-3.088-0.2622.33-3.088-4.366-4.366-3.088
08-2.194-3.0881.487-1.936-4.366-4.366-4.366-3.088-1.73-4.366-0.502-4.3660.207-2.5442.167-1.074
09-3.0880.0-1.414-1.414-3.088-4.366-4.366-2.544-1.1751.5161.7181.205-4.366-1.287-2.544-1.73
10-4.366-2.194-1.73-2.1940.0320.782-1.9360.909-0.1040.7660.3790.333-0.6810.309-0.3060.207
11-0.618-0.141-0.748-0.5580.0640.735-1.560.895-1.1750.064-0.897-0.306-0.3510.259-0.3990.935
12-0.2620.032-0.618-1.287-0.068-0.18-1.4141.195-0.748-0.82-0.502-1.414-0.0330.6870.5640.465