Model info
Transcription factorNkx2-1
ModelNKX21_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusbbWKGAGWGb
Best auROC (human)0.9234991641054136
Best auROC (mouse)0.9203774006030857
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)9
Aligned words500
TF familyNK-related factors{3.1.2}
TF subfamilyNK-2.1{3.1.2.14}
MGI108067
EntrezGene21869
UniProt IDNKX21_MOUSE
UniProt ACP50220
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.39288
0.0005 6.38491
0.0001 8.07239
GTEx tissue expression atlas Nkx2-1 expression
ReMap ChIP-seq dataset list Nkx2-1 datasets
Motifs in JASPAR
PCM
ACGT
0184.096.097.0223.0
0262.0179.0121.0138.0
0371.044.09.0376.0
0428.06.0133.0333.0
051.05.0493.01.0
06497.00.00.03.0
074.00.0496.00.0
08116.01.024.0359.0
0931.01.0458.010.0
1024.0142.0239.095.0
PWM
ACGT
01-0.392-0.26-0.250.573
02-0.6890.355-0.0320.098
03-0.556-1.022-2.4841.093
04-1.454-2.8190.0610.972
05-3.903-2.9611.363-3.903
061.371-4.4-4.4-3.325
07-3.126-4.41.369-4.4
08-0.074-3.903-1.61.047
09-1.358-3.9031.29-2.394
10-1.60.1260.642-0.271