Model info
Transcription factorNKX2-2
ModelNKX22_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
0
ConsensusnYbRAGTGbn
Best auROC (human)0.3885037286867787
Best auROC (mouse)0.8180923376676325
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words510
TF familyNK-related factors{3.1.2}
TF subfamilyNK-2.2{3.1.2.15}
HGNC7835
EntrezGene4821
UniProt IDNKX22_HUMAN
UniProt ACO95096
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.043935
0.0005 13.194164999999998
0.0001 15.188925000000001
GTEx tissue expression atlas NKX2-2 expression
ReMap ChIP-seq dataset list NKX2-2 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
015.08.09.072.06.010.07.0141.06.017.012.0100.04.014.05.084.0
022.03.013.03.011.02.07.029.00.07.017.09.034.099.0149.0115.0
0313.01.032.01.070.01.038.02.065.04.0113.04.063.00.093.00.0
04210.01.00.00.06.00.00.00.0272.01.01.02.07.00.00.00.0
050.00.0495.00.00.00.02.00.00.00.01.00.00.00.02.00.0
060.00.00.00.00.00.00.00.0181.00.00.0319.00.00.00.00.0
071.00.0179.01.00.00.00.00.00.00.00.00.02.02.0315.00.0
080.00.03.00.00.00.02.00.020.0123.0257.094.00.00.01.00.0
094.09.03.04.019.041.013.050.035.094.087.047.013.025.032.024.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.77-1.328-1.2150.828-1.6-1.114-1.4541.497-1.6-0.599-0.9381.155-1.975-0.788-1.770.981
02-2.584-2.234-0.86-2.234-1.022-2.584-1.454-0.074-4.4-1.454-0.599-1.2150.0831.1451.5521.294
03-0.86-3.1260.023-3.1260.8-3.1260.193-2.5840.726-1.9751.276-1.9750.695-4.41.082-4.4
041.895-3.126-4.4-4.4-1.6-4.4-4.4-4.42.153-3.126-3.126-2.584-1.454-4.4-4.4-4.4
05-4.4-4.42.751-4.4-4.4-4.4-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.4-2.584-4.4
06-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.41.746-4.4-4.42.312-4.4-4.4-4.4-4.4
07-3.126-4.41.735-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.584-2.5842.299-4.4
08-4.4-4.4-2.234-4.4-4.4-4.4-2.584-4.4-0.4391.3612.0961.093-4.4-4.4-3.126-4.4
09-1.975-1.215-2.234-1.975-0.490.269-0.860.4650.1121.0931.0160.404-0.86-0.220.023-0.26