Model info
Transcription factorNkx2-2
ModelNKX22_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusbTbRAGWGbbb
Best auROC (human)0.3988241996741206
Best auROC (mouse)0.8199932619202672
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words500
TF familyNK-related factors{3.1.2}
TF subfamilyNK-2.2{3.1.2.15}
MGI97347
EntrezGene18088
UniProt IDNKX22_MOUSE
UniProt ACP42586
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.571985
0.0005 6.403335
0.0001 7.597325
GTEx tissue expression atlas Nkx2-2 expression
Motifs in JASPAR
PCM
ACGT
0167.0207.0135.091.0
0213.036.048.0403.0
0347.0106.0195.0152.0
04217.025.0253.05.0
05498.01.00.01.0
062.03.0493.02.0
07184.00.025.0291.0
083.02.0493.02.0
0927.0125.0247.0101.0
1048.0192.0149.0111.0
1182.0109.0106.0203.0
PWM
ACGT
01-0.6130.50.076-0.313
02-2.163-1.215-0.9381.162
03-0.958-0.1630.440.193
040.546-1.5610.699-2.961
051.373-3.903-4.4-3.903
06-3.573-3.3251.363-3.573
070.383-4.4-1.5610.838
08-3.325-3.5731.363-3.573
09-1.4890.00.675-0.21
10-0.9380.4250.174-0.117
11-0.415-0.135-0.1630.48