Model info
Transcription factorNkx2-5
ModelNKX25_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusnbhKGAGTGbn
Best auROC (human)0.6624447790948909
Best auROC (mouse)0.8819065535472614
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words525
TF familyNK-related factors{3.1.2}
TF subfamilyNK-4{3.1.2.17}
MGI97350
EntrezGene18091
UniProt IDNKX25_MOUSE
UniProt ACP42582
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.819354999999998
0.0005 12.934180000000001
0.0001 15.99478
GTEx tissue expression atlas Nkx2-5 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0113.052.047.013.019.041.06.030.05.055.047.08.010.065.065.024.0
0212.013.02.020.066.039.09.099.034.044.02.085.09.019.05.042.0
0318.03.041.059.011.01.02.0101.00.03.04.011.010.01.088.0147.0
040.00.039.00.00.00.08.00.013.00.0122.00.021.00.0296.01.0
0534.00.00.00.00.00.00.00.0464.01.00.00.01.00.00.00.0
061.00.0498.00.00.00.01.00.00.00.00.00.00.00.00.00.0
070.00.00.01.00.00.00.00.0151.00.01.0347.00.00.00.00.0
082.00.0148.01.00.00.00.00.00.00.01.00.09.03.0334.02.0
090.07.04.00.00.01.00.02.011.0158.0212.0102.00.01.02.00.0
103.04.01.03.031.059.08.069.059.066.060.033.012.028.026.038.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.860.5040.404-0.86-0.490.269-1.6-0.04-1.770.560.404-1.328-1.1140.7260.726-0.26
02-0.938-0.86-2.584-0.4390.7410.219-1.2151.1450.0830.339-2.5840.993-1.215-0.49-1.770.293
03-0.543-2.2340.2690.63-1.022-3.126-2.5841.165-4.4-2.234-1.975-1.022-1.114-3.1261.0271.539
04-4.4-4.40.219-4.4-4.4-4.4-1.328-4.4-0.86-4.41.353-4.4-0.392-4.42.237-3.126
050.083-4.4-4.4-4.4-4.4-4.4-4.4-4.42.686-3.126-4.4-4.4-3.126-4.4-4.4-4.4
06-3.126-4.42.757-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
07-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.41.565-4.4-3.1262.396-4.4-4.4-4.4-4.4
08-2.584-4.41.545-3.126-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-1.215-2.2342.358-2.584
09-4.4-1.454-1.975-4.4-4.4-3.126-4.4-2.584-1.0221.6111.9041.174-4.4-3.126-2.584-4.4
10-2.234-1.975-3.126-2.234-0.0080.63-1.3280.7850.630.7410.6460.054-0.938-0.108-0.1810.193