Model info
Transcription factorNkx3-1
ModelNKX31_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusnbdRAGTGbYWd
Best auROC (human)0.7915497823777903
Best auROC (mouse)0.6618795395212416
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)10
Aligned words501
TF familyNK-related factors{3.1.2}
TF subfamilyNK-3{3.1.2.16}
MGI97352
EntrezGene18095
UniProt IDNKX31_MOUSE
UniProt ACP97436
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.625629999999999
0.0005 6.399335000000001
0.0001 7.85392
GTEx tissue expression atlas Nkx3-1 expression
Motifs in JASPAR
PCM
ACGT
0195.098.0161.0146.0
0243.0126.049.0282.0
03126.054.076.0244.0
04380.027.086.07.0
05480.01.010.09.0
062.02.0493.03.0
0744.01.09.0446.0
0885.07.0402.06.0
099.0226.0133.0132.0
1071.0128.019.0282.0
1178.043.053.0326.0
12140.042.0148.0170.0
PWM
ACGT
01-0.271-0.240.250.154
02-1.0440.008-0.9180.807
030.008-0.823-0.490.663
041.104-1.489-0.368-2.694
051.336-3.903-2.394-2.484
06-3.573-3.5731.363-3.325
07-1.022-3.903-2.4841.263
08-0.38-2.6941.16-2.819
09-2.4840.5870.0610.054
10-0.5560.023-1.8180.807
11-0.464-1.044-0.8410.951
120.112-1.0670.1670.304