Model info
| Transcription factor | Nkx3-1 | ||||||||
| Model | NKX31_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nbdRAGTGbYWd | ||||||||
| Best auROC (human) | 0.792 | ||||||||
| Best auROC (mouse) | 0.662 | ||||||||
| Peak sets in benchmark (human) | 11 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-3 {3.1.2.16} | ||||||||
| MGI | MGI:97352 | ||||||||
| EntrezGene | GeneID:18095 (SSTAR profile) | ||||||||
| UniProt ID | NKX31_MOUSE | ||||||||
| UniProt AC | P97436 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nkx3-1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 95.0 | 98.0 | 161.0 | 146.0 |
| 02 | 43.0 | 126.0 | 49.0 | 282.0 |
| 03 | 126.0 | 54.0 | 76.0 | 244.0 |
| 04 | 380.0 | 27.0 | 86.0 | 7.0 |
| 05 | 480.0 | 1.0 | 10.0 | 9.0 |
| 06 | 2.0 | 2.0 | 493.0 | 3.0 |
| 07 | 44.0 | 1.0 | 9.0 | 446.0 |
| 08 | 85.0 | 7.0 | 402.0 | 6.0 |
| 09 | 9.0 | 226.0 | 133.0 | 132.0 |
| 10 | 71.0 | 128.0 | 19.0 | 282.0 |
| 11 | 78.0 | 43.0 | 53.0 | 326.0 |
| 12 | 140.0 | 42.0 | 148.0 | 170.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.271 | -0.24 | 0.25 | 0.154 |
| 02 | -1.044 | 0.008 | -0.918 | 0.807 |
| 03 | 0.008 | -0.823 | -0.49 | 0.663 |
| 04 | 1.104 | -1.489 | -0.368 | -2.694 |
| 05 | 1.336 | -3.903 | -2.394 | -2.484 |
| 06 | -3.573 | -3.573 | 1.363 | -3.325 |
| 07 | -1.022 | -3.903 | -2.484 | 1.263 |
| 08 | -0.38 | -2.694 | 1.16 | -2.819 |
| 09 | -2.484 | 0.587 | 0.061 | 0.054 |
| 10 | -0.556 | 0.023 | -1.818 | 0.807 |
| 11 | -0.464 | -1.044 | -0.841 | 0.951 |
| 12 | 0.112 | -1.067 | 0.167 | 0.304 |