Model info
Transcription factorNkx3-2
ModelNKX32_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
B
Motif rank
0
ConsensusnWTAAGTGbdYn
Best auROC (human)
Best auROC (mouse)0.9786261289462341
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)6
Aligned words585
TF familyNK-related factors{3.1.2}
TF subfamilyNK-3{3.1.2.16}
MGI108015
EntrezGene12020
UniProt IDNKX32_MOUSE
UniProt ACP97503
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.543610000000001
0.0005 11.600155
0.0001 16.14393
GTEx tissue expression atlas Nkx3-2 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0122.022.010.082.016.011.04.048.027.012.05.058.036.07.027.098.0
020.06.02.093.00.04.00.048.02.02.04.038.015.07.09.0255.0
0317.00.00.00.018.01.00.00.014.01.00.00.0411.011.012.00.0
04458.01.00.01.012.01.00.00.012.00.00.00.00.00.00.00.0
050.00.0481.01.00.00.02.00.00.00.00.00.00.00.01.00.0
060.00.00.00.00.00.00.00.02.00.015.0467.00.00.00.01.0
070.00.02.00.00.00.00.00.01.01.013.00.09.02.0457.00.0
080.04.03.03.00.02.01.00.019.083.0157.0213.00.00.00.00.0
094.03.06.06.023.011.05.050.058.022.018.063.043.026.072.075.0
1019.032.08.069.014.016.02.030.010.013.04.074.033.031.015.0115.0
1119.020.020.017.037.010.05.040.07.05.08.09.079.033.0102.074.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.316-0.316-1.0840.987-0.628-0.992-1.9460.455-0.114-0.908-1.740.6430.17-1.425-0.1141.165
02-4.375-1.57-2.5541.113-4.375-1.946-4.3750.455-2.554-2.554-1.9460.223-0.691-1.425-1.1852.119
03-0.569-4.375-4.375-4.375-0.513-3.097-4.375-4.375-0.758-3.097-4.375-4.3752.595-0.992-0.908-4.375
042.703-3.097-4.375-3.097-0.908-3.097-4.375-4.375-0.908-4.375-4.375-4.375-4.375-4.375-4.375-4.375
05-4.375-4.3752.752-3.097-4.375-4.375-2.554-4.375-4.375-4.375-4.375-4.375-4.375-4.375-3.097-4.375
06-4.375-4.375-4.375-4.375-4.375-4.375-4.375-4.375-2.554-4.375-0.6912.723-4.375-4.375-4.375-3.097
07-4.375-4.375-2.554-4.375-4.375-4.375-4.375-4.375-3.097-3.097-0.83-4.375-1.185-2.5542.701-4.375
08-4.375-1.946-2.204-2.204-4.375-2.554-3.097-4.375-0.460.9991.6341.939-4.375-4.375-4.375-4.375
09-1.946-2.204-1.57-1.57-0.272-0.992-1.740.4950.643-0.316-0.5130.7250.346-0.1510.8580.898
10-0.460.054-1.2980.815-0.758-0.628-2.554-0.01-1.084-0.83-1.9460.8850.0840.022-0.6911.324
11-0.46-0.409-0.409-0.5690.197-1.084-1.740.274-1.425-1.74-1.298-1.1850.950.0841.2050.885