Model info
Transcription factorNKX6-1
ModelNKX61_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusvRhdRATKdvndWWWRAWd
Best auROC (human)0.4327359777488653
Best auROC (mouse)0.9607883135377686
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)8
Aligned words500
TF familyNK-related factors{3.1.2}
TF subfamilyNK-6{3.1.2.19}
HGNC7839
EntrezGene4825
UniProt IDNKX61_HUMAN
UniProt ACP78426
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.86816
0.0005 6.72306
0.0001 8.470410000000001
GTEx tissue expression atlas NKX6-1 expression
ReMap ChIP-seq dataset list NKX6-1 datasets
Motifs in JASPAR
PCM
ACGT
01122.059.0263.056.0
02353.044.075.028.0
0384.0135.046.0235.0
04156.025.059.0260.0
05304.030.0133.033.0
06493.01.04.02.0
0715.023.062.0400.0
0821.046.0280.0153.0
09189.037.0200.074.0
1063.0168.0216.053.0
11167.0108.079.0146.0
12230.030.053.0187.0
13195.028.021.0256.0
14149.028.024.0299.0
1569.052.026.0353.0
16298.054.0127.021.0
17490.00.07.03.0
1863.015.035.0387.0
1977.046.0199.0178.0
PWM
ACGT
01-0.024-0.7370.737-0.788
021.03-1.022-0.503-1.454
03-0.3920.076-0.9790.626
040.219-1.561-0.7370.726
050.881-1.3890.061-1.298
061.363-3.903-3.126-3.573
07-2.034-1.64-0.6891.155
08-1.725-0.9790.80.2
090.409-1.1890.465-0.516
10-0.6730.2930.542-0.841
110.287-0.144-0.4520.154
120.604-1.389-0.8410.399
130.44-1.454-1.7250.711
140.174-1.454-1.60.865
15-0.584-0.86-1.5251.03
160.862-0.8230.016-1.725
171.357-4.4-2.694-3.325
18-0.673-2.034-1.2421.122
19-0.477-0.9790.460.35