Transcription factor | Nkx6-1 | ||||||||
Model | NKX61_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 22 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | ddRhdRAKKdbhdWWWRAWddn | ||||||||
Best auROC (human) | 0.435 | ||||||||
Best auROC (mouse) | 0.975 | ||||||||
Peak sets in benchmark (human) | 3 | ||||||||
Peak sets in benchmark (mouse) | 8 | ||||||||
Aligned words | 510 | ||||||||
TF family | NK-related factors {3.1.2} | ||||||||
TF subfamily | NK-6 {3.1.2.19} | ||||||||
MGI | MGI:1206039 | ||||||||
EntrezGene | GeneID:18096 (SSTAR profile) | ||||||||
UniProt ID | NKX61_MOUSE | ||||||||
UniProt AC | Q99MA9 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nkx6-1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 51.0 | 5.0 | 96.0 | 17.0 | 29.0 | 9.0 | 9.0 | 17.0 | 38.0 | 4.0 | 25.0 | 24.0 | 32.0 | 17.0 | 88.0 | 38.0 |
02 | 106.0 | 17.0 | 20.0 | 7.0 | 12.0 | 12.0 | 0.0 | 11.0 | 175.0 | 17.0 | 17.0 | 9.0 | 46.0 | 12.0 | 24.0 | 14.0 |
03 | 70.0 | 65.0 | 30.0 | 174.0 | 15.0 | 14.0 | 5.0 | 24.0 | 11.0 | 20.0 | 7.0 | 23.0 | 7.0 | 7.0 | 10.0 | 17.0 |
04 | 40.0 | 9.0 | 15.0 | 39.0 | 46.0 | 1.0 | 6.0 | 53.0 | 17.0 | 8.0 | 4.0 | 23.0 | 39.0 | 10.0 | 46.0 | 143.0 |
05 | 105.0 | 11.0 | 16.0 | 10.0 | 20.0 | 1.0 | 4.0 | 3.0 | 44.0 | 4.0 | 19.0 | 4.0 | 139.0 | 14.0 | 58.0 | 47.0 |
06 | 299.0 | 1.0 | 4.0 | 4.0 | 30.0 | 0.0 | 0.0 | 0.0 | 92.0 | 1.0 | 1.0 | 3.0 | 61.0 | 1.0 | 2.0 | 0.0 |
07 | 37.0 | 17.0 | 65.0 | 363.0 | 0.0 | 0.0 | 1.0 | 2.0 | 0.0 | 0.0 | 2.0 | 5.0 | 0.0 | 0.0 | 2.0 | 5.0 |
08 | 1.0 | 5.0 | 16.0 | 15.0 | 3.0 | 1.0 | 3.0 | 10.0 | 8.0 | 24.0 | 11.0 | 27.0 | 13.0 | 25.0 | 225.0 | 112.0 |
09 | 3.0 | 0.0 | 16.0 | 6.0 | 24.0 | 2.0 | 8.0 | 21.0 | 97.0 | 21.0 | 91.0 | 46.0 | 35.0 | 14.0 | 82.0 | 33.0 |
10 | 17.0 | 53.0 | 70.0 | 19.0 | 9.0 | 9.0 | 8.0 | 11.0 | 40.0 | 67.0 | 56.0 | 34.0 | 9.0 | 29.0 | 49.0 | 19.0 |
11 | 20.0 | 20.0 | 9.0 | 26.0 | 56.0 | 26.0 | 7.0 | 69.0 | 56.0 | 54.0 | 27.0 | 46.0 | 21.0 | 19.0 | 17.0 | 26.0 |
12 | 64.0 | 9.0 | 33.0 | 47.0 | 46.0 | 10.0 | 2.0 | 61.0 | 38.0 | 2.0 | 6.0 | 14.0 | 32.0 | 15.0 | 24.0 | 96.0 |
13 | 104.0 | 3.0 | 6.0 | 67.0 | 11.0 | 2.0 | 0.0 | 23.0 | 26.0 | 0.0 | 4.0 | 35.0 | 54.0 | 10.0 | 0.0 | 154.0 |
14 | 98.0 | 4.0 | 15.0 | 78.0 | 3.0 | 1.0 | 0.0 | 11.0 | 3.0 | 0.0 | 2.0 | 5.0 | 46.0 | 8.0 | 10.0 | 215.0 |
15 | 29.0 | 14.0 | 6.0 | 101.0 | 0.0 | 4.0 | 1.0 | 8.0 | 5.0 | 2.0 | 3.0 | 17.0 | 31.0 | 29.0 | 11.0 | 238.0 |
16 | 46.0 | 3.0 | 13.0 | 3.0 | 33.0 | 9.0 | 4.0 | 3.0 | 15.0 | 5.0 | 1.0 | 0.0 | 252.0 | 49.0 | 54.0 | 9.0 |
17 | 337.0 | 6.0 | 2.0 | 1.0 | 64.0 | 1.0 | 0.0 | 1.0 | 72.0 | 0.0 | 0.0 | 0.0 | 15.0 | 0.0 | 0.0 | 0.0 |
18 | 59.0 | 31.0 | 25.0 | 373.0 | 2.0 | 1.0 | 1.0 | 3.0 | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 |
19 | 14.0 | 9.0 | 16.0 | 23.0 | 13.0 | 2.0 | 13.0 | 5.0 | 0.0 | 1.0 | 5.0 | 20.0 | 45.0 | 18.0 | 153.0 | 162.0 |
20 | 24.0 | 5.0 | 36.0 | 7.0 | 19.0 | 4.0 | 2.0 | 5.0 | 79.0 | 27.0 | 51.0 | 30.0 | 56.0 | 16.0 | 97.0 | 41.0 |
21 | 35.0 | 53.0 | 54.0 | 36.0 | 24.0 | 12.0 | 2.0 | 14.0 | 49.0 | 38.0 | 47.0 | 52.0 | 21.0 | 18.0 | 31.0 | 13.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.487 | -1.768 | 1.116 | -0.597 | -0.072 | -1.213 | -1.213 | -0.597 | 0.195 | -1.973 | -0.218 | -0.258 | 0.025 | -0.597 | 1.029 | 0.195 |
02 | 1.215 | -0.597 | -0.437 | -1.452 | -0.936 | -0.936 | -4.398 | -1.02 | 1.715 | -0.597 | -0.597 | -1.213 | 0.385 | -0.936 | -0.258 | -0.786 |
03 | 0.802 | 0.728 | -0.038 | 1.709 | -0.719 | -0.786 | -1.768 | -0.258 | -1.02 | -0.437 | -1.452 | -0.3 | -1.452 | -1.452 | -1.112 | -0.597 |
04 | 0.246 | -1.213 | -0.719 | 0.221 | 0.385 | -3.124 | -1.598 | 0.525 | -0.597 | -1.326 | -1.973 | -0.3 | 0.221 | -1.112 | 0.385 | 1.513 |
05 | 1.205 | -1.02 | -0.656 | -1.112 | -0.437 | -3.124 | -1.973 | -2.232 | 0.341 | -1.973 | -0.488 | -1.973 | 1.485 | -0.786 | 0.615 | 0.406 |
06 | 2.249 | -3.124 | -1.973 | -1.973 | -0.038 | -4.398 | -4.398 | -4.398 | 1.074 | -3.124 | -3.124 | -2.232 | 0.665 | -3.124 | -2.582 | -4.398 |
07 | 0.169 | -0.597 | 0.728 | 2.443 | -4.398 | -4.398 | -3.124 | -2.582 | -4.398 | -4.398 | -2.582 | -1.768 | -4.398 | -4.398 | -2.582 | -1.768 |
08 | -3.124 | -1.768 | -0.656 | -0.719 | -2.232 | -3.124 | -2.232 | -1.112 | -1.326 | -0.258 | -1.02 | -0.142 | -0.858 | -0.218 | 1.965 | 1.27 |
09 | -2.232 | -4.398 | -0.656 | -1.598 | -0.258 | -2.582 | -1.326 | -0.39 | 1.126 | -0.39 | 1.063 | 0.385 | 0.114 | -0.786 | 0.959 | 0.056 |
10 | -0.597 | 0.525 | 0.802 | -0.488 | -1.213 | -1.213 | -1.326 | -1.02 | 0.246 | 0.758 | 0.58 | 0.085 | -1.213 | -0.072 | 0.447 | -0.488 |
11 | -0.437 | -0.437 | -1.213 | -0.179 | 0.58 | -0.179 | -1.452 | 0.787 | 0.58 | 0.544 | -0.142 | 0.385 | -0.39 | -0.488 | -0.597 | -0.179 |
12 | 0.713 | -1.213 | 0.056 | 0.406 | 0.385 | -1.112 | -2.582 | 0.665 | 0.195 | -2.582 | -1.598 | -0.786 | 0.025 | -0.719 | -0.258 | 1.116 |
13 | 1.196 | -2.232 | -1.598 | 0.758 | -1.02 | -2.582 | -4.398 | -0.3 | -0.179 | -4.398 | -1.973 | 0.114 | 0.544 | -1.112 | -4.398 | 1.587 |
14 | 1.137 | -1.973 | -0.719 | 0.909 | -2.232 | -3.124 | -4.398 | -1.02 | -2.232 | -4.398 | -2.582 | -1.768 | 0.385 | -1.326 | -1.112 | 1.92 |
15 | -0.072 | -0.786 | -1.598 | 1.167 | -4.398 | -1.973 | -3.124 | -1.326 | -1.768 | -2.582 | -2.232 | -0.597 | -0.006 | -0.072 | -1.02 | 2.022 |
16 | 0.385 | -2.232 | -0.858 | -2.232 | 0.056 | -1.213 | -1.973 | -2.232 | -0.719 | -1.768 | -3.124 | -4.398 | 2.079 | 0.447 | 0.544 | -1.213 |
17 | 2.369 | -1.598 | -2.582 | -3.124 | 0.713 | -3.124 | -4.398 | -3.124 | 0.83 | -4.398 | -4.398 | -4.398 | -0.719 | -4.398 | -4.398 | -4.398 |
18 | 0.632 | -0.006 | -0.218 | 2.47 | -2.582 | -3.124 | -3.124 | -2.232 | -3.124 | -3.124 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -2.582 |
19 | -0.786 | -1.213 | -0.656 | -0.3 | -0.858 | -2.582 | -0.858 | -1.768 | -4.398 | -3.124 | -1.768 | -0.437 | 0.363 | -0.541 | 1.581 | 1.638 |
20 | -0.258 | -1.768 | 0.142 | -1.452 | -0.488 | -1.973 | -2.582 | -1.768 | 0.922 | -0.142 | 0.487 | -0.038 | 0.58 | -0.656 | 1.126 | 0.271 |
21 | 0.114 | 0.525 | 0.544 | 0.142 | -0.258 | -0.936 | -2.582 | -0.786 | 0.447 | 0.195 | 0.406 | 0.506 | -0.39 | -0.541 | -0.006 | -0.858 |