Model info
Transcription factorNkx6-1
ModelNKX61_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusMhWdATKdvhWWWWRAWdd
Best auROC (human)0.37897494451616043
Best auROC (mouse)0.9530445614810763
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)8
Aligned words498
TF familyNK-related factors{3.1.2}
TF subfamilyNK-6{3.1.2.19}
MGI1206039
EntrezGene18096
UniProt IDNKX61_MOUSE
UniProt ACQ99MA9
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.88831
0.0005 6.698860000000001
0.0001 8.381310000000001
GTEx tissue expression atlas Nkx6-1 expression
Motifs in JASPAR
PCM
ACGT
01306.066.062.064.0
0291.0119.080.0208.0
03136.030.036.0296.0
04287.039.0105.067.0
05465.06.014.013.0
0627.012.060.0399.0
0729.038.0250.0181.0
08112.031.0216.0139.0
0980.0149.0200.069.0
10172.0132.060.0134.0
11206.026.034.0232.0
12147.026.035.0290.0
13113.025.020.0340.0
1451.042.021.0384.0
15300.066.0113.019.0
16476.09.05.08.0
1758.09.044.0387.0
1893.014.0183.0208.0
19215.044.0185.054.0
PWM
ACGT
010.892-0.624-0.685-0.654
02-0.309-0.045-0.4350.508
030.087-1.385-1.2110.859
040.828-1.134-0.168-0.609
051.309-2.815-2.092-2.159
06-1.485-2.23-0.7171.156
07-1.417-1.1590.6910.37
08-0.104-1.3540.5460.109
09-0.4350.1780.469-0.58
100.320.058-0.7170.073
110.499-1.521-1.2660.617
120.164-1.521-1.2380.839
13-0.096-1.558-1.7660.997
14-0.875-1.063-1.7211.118
150.872-0.624-0.096-1.814
161.332-2.48-2.957-2.58
17-0.75-2.48-1.0181.126
18-0.288-2.0920.3810.508
190.541-1.0180.392-0.819