Model info
Transcription factorNR1D1
(GeneCards)
ModelNR1D1_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusdRvnMWbWGKGdMAvdddv
Best auROC (human)0.615
Best auROC (mouse)0.883
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)53
Aligned words501
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRev-ErbA (NR1D) {2.1.2.3}
HGNCHGNC:7962
EntrezGeneGeneID:9572
(SSTAR profile)
UniProt IDNR1D1_HUMAN
UniProt ACP20393
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.228009999999999
0.0005 6.00826
0.0001 7.6174100000000005
GTEx tissue expression atlas NR1D1 expression
ReMap ChIP-seq dataset list NR1D1 datasets
Motifs in JASPAR
PCM
ACGT
01211.040.0161.088.0
02154.028.0268.050.0
03125.0105.0246.024.0
04135.0107.0161.097.0
05237.0225.023.015.0
06369.03.028.0100.0
0740.0183.0214.063.0
0853.012.041.0394.0
0998.01.0386.015.0
1033.06.0365.096.0
1110.025.0445.020.0
1273.071.098.0258.0
1362.0335.058.045.0
14439.020.011.030.0
15105.097.0233.065.0
16180.059.0156.0105.0
17184.065.0176.075.0
18134.043.0209.0114.0
19117.088.0216.079.0
PWM
ACGT
010.519-1.1140.25-0.346
020.206-1.4540.756-0.898
030.0-0.1720.671-1.6
040.076-0.1530.25-0.25
050.6340.582-1.64-2.034
061.074-3.325-1.454-0.22
07-1.1140.3770.533-0.673
08-0.841-2.234-1.091.14
09-0.24-3.9031.119-2.034
10-1.298-2.8191.063-0.26
11-2.394-1.5611.261-1.77
12-0.529-0.556-0.240.718
13-0.6890.978-0.754-1.0
141.247-1.77-2.311-1.389
15-0.172-0.250.617-0.643
160.361-0.7370.219-0.172
170.383-0.6430.339-0.503
180.069-1.0440.509-0.091
19-0.065-0.3460.542-0.452