Model info
Transcription factorNR1D1
ModelNR1D1_HUMAN.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length14
Quality
D
Motif rank
1
ConsensusWWAAvTAGGTCAnd
Best auROC (human)0.4186328962770005
Best auROC (mouse)0.7591639660062834
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)53
Aligned words13
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRev-ErbA (NR1D){2.1.2.3}
HGNC7962
EntrezGene9572
UniProt IDNR1D1_HUMAN
UniProt ACP20393
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.298159999999999
0.0005 6.11669
0.0001 7.8404799999999994
GTEx tissue expression atlas NR1D1 expression
ReMap ChIP-seq dataset list NR1D1 datasets
Motifs in JASPAR
PCM
ACGT
017.5640.5082.3252.539
026.8430.01.0695.025
0310.9060.9620.01.069
0410.9060.00.02.031
054.0631.9255.8811.069
060.01.0691.06910.799
0710.9060.02.0310.0
080.00.011.8681.069
090.00.012.9370.0
100.00.00.012.937
110.012.0820.00.855
1212.9370.00.00.0
134.9181.0694.9182.031
145.5060.4812.5134.437
PWM
ACGT
010.75-1.216-0.267-0.198
020.658-1.801-0.8180.38
031.092-0.883-1.801-0.818
041.092-1.801-1.801-0.372
050.194-0.4130.521-0.818
06-1.801-0.818-0.8181.083
071.092-1.801-0.372-1.801
08-1.801-1.8011.172-0.818
09-1.801-1.8011.254-1.801
10-1.801-1.801-1.8011.254
11-1.8011.189-1.801-0.952
121.254-1.801-1.801-1.801
130.361-0.8180.361-0.372
140.461-1.24-0.2060.27