Model info
Transcription factorNr1d2
ModelNR1D2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusdvRdMWvKRRGKCAvdvdd
Best auROC (human)
Best auROC (mouse)0.8919193161268264
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)12
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRev-ErbA (NR1D){2.1.2.3}
MGI2449205
EntrezGene353187
UniProt IDNR1D2_MOUSE
UniProt ACQ60674
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.20306
0.0005 6.05471
0.0001 7.796760000000001
GTEx tissue expression atlas Nr1d2 expression
Motifs in JASPAR
PCM
ACGT
01165.068.0183.084.0
02187.074.0194.045.0
03179.036.0253.032.0
04167.025.0197.0111.0
05293.0101.079.027.0
06272.018.071.0139.0
0769.0121.0261.049.0
0841.010.075.0374.0
09192.011.0287.010.0
10200.01.0281.018.0
1113.029.0452.06.0
129.032.080.0379.0
1316.0444.033.07.0
14476.03.03.018.0
1570.0145.0218.067.0
16193.060.0107.0140.0
17135.069.0239.057.0
18136.053.0228.083.0
19143.079.0192.086.0
PWM
ACGT
010.275-0.5990.377-0.392
020.399-0.5160.435-1.0
030.355-1.2150.699-1.328
040.287-1.5610.45-0.117
050.845-0.21-0.452-1.489
060.771-1.868-0.5560.105
07-0.584-0.0320.73-0.918
08-1.09-2.394-0.5031.088
090.425-2.3110.824-2.394
100.465-3.9030.803-1.868
11-2.163-1.4211.276-2.819
12-2.484-1.328-0.4391.101
13-1.9751.259-1.298-2.694
141.328-3.325-3.325-1.868
15-0.570.1470.551-0.613
160.43-0.721-0.1530.112
170.076-0.5840.642-0.771
180.083-0.8410.595-0.403
190.133-0.4520.425-0.368