Model info
Transcription factorNR1H2
ModelNR1H2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length19
Quality
D
Motif rank
0
ConsensusTMRAGGTCAAAGGTCAASK
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words24
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyLXR (NR1H){2.1.2.7}
HGNC7965
EntrezGene7376
UniProt IDNR1H2_HUMAN
UniProt ACP55055
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.66703
0.0005 2.9426750000000004
0.0001 5.71173
GTEx tissue expression atlas NR1H2 expression
ReMap ChIP-seq dataset list NR1H2 datasets
Motifs in JASPAR
PCM
ACGT
010.7810.7810.78116.408
0213.2833.9070.01.563
0313.2830.03.9071.563
0414.8450.03.9070.0
050.00.018.7520.0
060.00.017.9710.781
070.00.00.018.752
080.018.7520.00.0
0918.7520.00.00.0
1018.7520.00.00.0
1118.7520.00.00.0
120.00.018.7520.0
130.00.018.7520.0
140.00.00.018.752
150.018.7520.00.0
1618.7520.00.00.0
1715.6270.01.5631.563
180.011.724.6882.344
190.00.78111.726.251
PWM
ACGT
01-1.275-1.275-1.2751.151
020.95-0.156-2.001-0.859
030.95-2.001-0.156-0.859
041.056-2.001-0.156-2.001
05-2.001-2.0011.279-2.001
06-2.001-2.0011.238-1.275
07-2.001-2.001-2.0011.279
08-2.0011.279-2.001-2.001
091.279-2.001-2.001-2.001
101.279-2.001-2.001-2.001
111.279-2.001-2.001-2.001
12-2.001-2.0011.279-2.001
13-2.001-2.0011.279-2.001
14-2.001-2.001-2.0011.279
15-2.0011.279-2.001-2.001
161.279-2.001-2.001-2.001
171.105-2.001-0.859-0.859
18-2.0010.8320.0-0.566
19-2.001-1.2750.8320.253