Model info
Transcription factorNR1H3
ModelNR1H3_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
1
ConsensushvAGGKCAvd
Best auROC (human)0.7607299235567598
Best auROC (mouse)0.9030932397954113
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)10
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyLXR (NR1H){2.1.2.7}
HGNC7966
EntrezGene10062
UniProt IDNR1H3_HUMAN
UniProt ACQ13133
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.457255
0.0005 6.373295
0.0001 7.751605
GTEx tissue expression atlas NR1H3 expression
ReMap ChIP-seq dataset list NR1H3 datasets
Motifs in JASPAR
PCM
ACGT
01244.0139.050.067.0
02228.0133.0124.015.0
03439.03.048.010.0
046.00.0488.06.0
053.04.0442.051.0
0653.063.077.0307.0
073.0485.07.05.0
08491.04.04.01.0
09103.0162.0175.060.0
10205.074.0137.084.0
PWM
ACGT
010.6630.105-0.898-0.613
020.5950.061-0.008-2.034
031.247-3.325-0.938-2.394
04-2.819-4.41.353-2.819
05-3.325-3.1261.254-0.879
06-0.841-0.673-0.4770.891
07-3.3251.347-2.694-2.961
081.359-3.126-3.126-3.903
09-0.1910.2560.333-0.721
100.49-0.5160.091-0.392