Model info
Transcription factorNr1h3
ModelNR1H3_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusvdRdnMMRAGKYCAb
Best auROC (human)0.6062955864688495
Best auROC (mouse)0.8964644592200175
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)10
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyLXR (NR1H){2.1.2.7}
MGI1352462
EntrezGene22259
UniProt IDNR1H3_MOUSE
UniProt ACQ9Z0Y9
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.31661
0.0005 6.141859999999999
0.0001 7.823160000000001
GTEx tissue expression atlas Nr1h3 expression
Motifs in JASPAR
PCM
ACGT
0196.0156.0201.047.0
02250.022.089.0139.0
0370.028.0336.066.0
04112.030.0262.096.0
0563.0141.0141.0155.0
0649.0387.026.038.0
07392.067.09.032.0
08253.050.0174.023.0
09406.03.084.07.0
106.04.0477.013.0
1132.012.0285.0171.0
1215.0134.082.0269.0
1314.0425.020.041.0
14428.09.09.054.0
1574.0118.0206.0102.0
PWM
ACGT
01-0.260.2190.47-0.958
020.687-1.681-0.3350.105
03-0.57-1.4540.981-0.628
04-0.108-1.3890.734-0.26
05-0.6730.1190.1190.213
06-0.9181.122-1.525-1.163
071.135-0.613-2.484-1.328
080.699-0.8980.327-1.64
091.17-3.325-0.392-2.694
10-2.819-3.1261.33-2.163
11-1.328-2.2340.8170.31
12-2.0340.069-0.4150.76
13-2.0961.215-1.77-1.09
141.222-2.484-2.484-0.823
15-0.516-0.0570.495-0.201