Model info
Transcription factorNr1h3
ModelNR1H3_MOUSE.H11MO.2.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
2
ConsensushvAGGKCAvd
Best auROC (human)0.7607299235567598
Best auROC (mouse)0.9030932397954113
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)10
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyLXR (NR1H){2.1.2.7}
MGI1352462
EntrezGene22259
UniProt IDNR1H3_MOUSE
UniProt ACQ9Z0Y9
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.5515799999999995
0.0005 6.44374
0.0001 7.8942
GTEx tissue expression atlas Nr1h3 expression
Motifs in JASPAR
PCM
ACGT
01244.0139.050.067.0
02228.0133.0124.015.0
03439.03.048.010.0
046.00.0488.06.0
053.04.0442.051.0
0653.063.077.0307.0
073.0485.07.05.0
08491.04.04.01.0
09103.0162.0175.060.0
10205.074.0137.084.0
PWM
ACGT
010.6630.105-0.898-0.613
020.5950.061-0.008-2.034
031.247-3.325-0.938-2.394
04-2.819-4.41.353-2.819
05-3.325-3.1261.254-0.879
06-0.841-0.673-0.4770.891
07-3.3251.347-2.694-2.961
081.359-3.126-3.126-3.903
09-0.1910.2560.333-0.721
100.49-0.5160.091-0.392