Model info
Transcription factorNr1h4
ModelNR1H4_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
A
Motif rank
1
ConsensusRGGKCAbh
Best auROC (human)
Best auROC (mouse)0.8490635647255674
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)15
Aligned words501
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyLXR (NR1H){2.1.2.7}
MGI1352464
EntrezGene20186
UniProt IDNR1H4_MOUSE
UniProt ACQ60641
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.344975
0.0005 6.2697
0.0001 7.555014999999999
GTEx tissue expression atlas Nr1h4 expression
Motifs in JASPAR
PCM
ACGT
01274.018.0194.014.0
021.01.0494.04.0
036.011.0480.03.0
0419.047.074.0360.0
053.0486.010.01.0
06465.028.05.02.0
0748.098.0231.0123.0
0876.0109.071.0244.0
PWM
ACGT
010.778-1.8680.435-2.096
02-3.903-3.9031.365-3.126
03-2.819-2.3111.336-3.325
04-1.818-0.958-0.5161.05
05-3.3251.349-2.394-3.903
061.305-1.454-2.961-3.573
07-0.938-0.240.608-0.016
08-0.49-0.135-0.5560.663