Model info
Transcription factorNr1i2
ModelNR1I2_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length19
Quality
C
Motif rank
0
ConsensusddRRSTYARnnRAGKTCAb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words29
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyVitamin D receptor (NR1I){2.1.2.4}
MGI1337040
EntrezGene18171
UniProt IDNR1I2_MOUSE
UniProt ACO54915
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.22391
0.0005 6.10616
0.0001 7.93896
GTEx tissue expression atlas Nr1i2 expression
Motifs in JASPAR
PCM
ACGT
019.383.6485.62810.527
028.7551.87611.6736.879
0312.6113.96111.5691.042
047.7130.019.3862.085
051.985.94116.3634.899
060.00.9381.87626.369
070.017.7181.8769.589
0820.6378.5460.00.0
0917.512.8144.7944.065
108.7556.0458.5465.837
119.6936.8796.7755.837
1217.4061.989.7970.0
1327.0990.02.0850.0
140.00.029.1830.0
150.02.0858.85918.239
162.8141.8761.04223.451
170.022.23.9613.023
1826.2650.9381.980.0
193.8046.61810.378.39
PWM
ACGT
010.228-0.595-0.2290.334
020.165-1.0960.43-0.053
030.503-0.5270.422-1.462
040.05-2.2670.91-1.022
05-1.059-0.1820.749-0.349
06-2.267-1.519-1.0961.207
07-2.2670.824-1.0960.248
080.970.143-2.267-2.267
090.813-0.8-0.367-0.506
100.165-0.1670.143-0.198
110.258-0.053-0.066-0.198
120.807-1.0590.268-2.267
131.233-2.267-1.022-2.267
14-2.267-2.2671.305-2.267
15-2.267-1.0220.1760.852
16-0.8-1.096-1.4621.094
17-2.2671.041-0.527-0.744
181.203-1.519-1.059-2.267
19-0.56-0.0870.320.126