Model info
| Transcription factor | Nr1i2 | ||||||||
| Model | NR1I2_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 19 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddRRSTYARnnRAGKTCAb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 29 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Vitamin D receptor (NR1I) {2.1.2.4} | ||||||||
| MGI | MGI:1337040 | ||||||||
| EntrezGene | GeneID:18171 (SSTAR profile) | ||||||||
| UniProt ID | NR1I2_MOUSE | ||||||||
| UniProt AC | O54915 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr1i2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 9.38 | 3.648 | 5.628 | 10.527 |
| 02 | 8.755 | 1.876 | 11.673 | 6.879 |
| 03 | 12.611 | 3.961 | 11.569 | 1.042 |
| 04 | 7.713 | 0.0 | 19.386 | 2.085 |
| 05 | 1.98 | 5.941 | 16.363 | 4.899 |
| 06 | 0.0 | 0.938 | 1.876 | 26.369 |
| 07 | 0.0 | 17.718 | 1.876 | 9.589 |
| 08 | 20.637 | 8.546 | 0.0 | 0.0 |
| 09 | 17.51 | 2.814 | 4.794 | 4.065 |
| 10 | 8.755 | 6.045 | 8.546 | 5.837 |
| 11 | 9.693 | 6.879 | 6.775 | 5.837 |
| 12 | 17.406 | 1.98 | 9.797 | 0.0 |
| 13 | 27.099 | 0.0 | 2.085 | 0.0 |
| 14 | 0.0 | 0.0 | 29.183 | 0.0 |
| 15 | 0.0 | 2.085 | 8.859 | 18.239 |
| 16 | 2.814 | 1.876 | 1.042 | 23.451 |
| 17 | 0.0 | 22.2 | 3.961 | 3.023 |
| 18 | 26.265 | 0.938 | 1.98 | 0.0 |
| 19 | 3.804 | 6.618 | 10.37 | 8.39 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.228 | -0.595 | -0.229 | 0.334 |
| 02 | 0.165 | -1.096 | 0.43 | -0.053 |
| 03 | 0.503 | -0.527 | 0.422 | -1.462 |
| 04 | 0.05 | -2.267 | 0.91 | -1.022 |
| 05 | -1.059 | -0.182 | 0.749 | -0.349 |
| 06 | -2.267 | -1.519 | -1.096 | 1.207 |
| 07 | -2.267 | 0.824 | -1.096 | 0.248 |
| 08 | 0.97 | 0.143 | -2.267 | -2.267 |
| 09 | 0.813 | -0.8 | -0.367 | -0.506 |
| 10 | 0.165 | -0.167 | 0.143 | -0.198 |
| 11 | 0.258 | -0.053 | -0.066 | -0.198 |
| 12 | 0.807 | -1.059 | 0.268 | -2.267 |
| 13 | 1.233 | -2.267 | -1.022 | -2.267 |
| 14 | -2.267 | -2.267 | 1.305 | -2.267 |
| 15 | -2.267 | -1.022 | 0.176 | 0.852 |
| 16 | -0.8 | -1.096 | -1.462 | 1.094 |
| 17 | -2.267 | 1.041 | -0.527 | -0.744 |
| 18 | 1.203 | -1.519 | -1.059 | -2.267 |
| 19 | -0.56 | -0.087 | 0.32 | 0.126 |