Model info
Transcription factorNR1I3
ModelNR1I3_HUMAN.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
D
Motif rank
1
ConsensusRAGTTCAb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words33
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyVitamin D receptor (NR1I){2.1.2.4}
HGNC7969
EntrezGene9970
UniProt IDNR1I3_HUMAN
UniProt ACQ14994
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.255385
0.0005 6.45153
0.0001 7.526625
GTEx tissue expression atlas NR1I3 expression
ReMap ChIP-seq dataset list NR1I3 datasets
Motifs in JASPAR
PCM
ACGT
0116.5780.96911.4114.198
0224.0060.09.150.0
030.00.033.1560.0
040.00.012.91820.238
050.00.00.033.156
060.030.0342.0451.076
0733.1560.00.00.0
081.9389.79610.65710.765
PWM
ACGT
010.644-1.6030.293-0.591
020.999-2.3480.09-2.348
03-2.348-2.3481.312-2.348
04-2.348-2.3480.4090.835
05-2.348-2.348-2.3481.312
06-2.3481.216-1.144-1.547
071.312-2.348-2.348-2.348
08-1.1810.1520.230.239