Model info
Transcription factorNr1i3
ModelNR1I3_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length18
Quality
C
Motif rank
0
ConsensusRRGSTCAvvvRAGKWYRd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words28
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyVitamin D receptor (NR1I){2.1.2.4}
MGI1346307
EntrezGene12355
UniProt IDNR1I3_MOUSE
UniProt ACO35627
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.99046
0.0005 5.88706
0.0001 7.76006
GTEx tissue expression atlas Nr1i3 expression
Motifs in JASPAR
PCM
ACGT
019.0490.013.845.11
0212.7762.12913.0950.0
035.0040.020.9732.023
040.03.93920.3353.726
050.00.00.95827.042
060.022.9961.9163.087
0725.9772.0230.00.0
088.9434.57810.0084.471
097.1335.4310.8594.578
1011.1795.5367.4523.833
1116.2892.0238.730.958
1225.3380.02.6620.0
131.0650.026.9350.0
140.01.815.96220.228
154.8972.9810.020.122
160.019.8022.0236.175
1719.9092.0233.9392.129
185.1373.96610.0348.863
PWM
ACGT
010.232-2.2410.628-0.276
020.552-0.9720.576-2.241
03-0.294-2.2411.024-1.009
04-2.241-0.4960.994-0.541
05-2.241-2.241-1.4751.269
06-2.2411.113-1.047-0.692
071.23-1.009-2.241-2.241
080.222-0.370.325-0.39
090.017-0.2240.401-0.37
100.428-0.2070.056-0.518
110.782-1.0090.2-1.475
121.206-2.241-0.807-2.241
13-1.418-2.2411.266-2.241
14-2.241-1.086-0.1420.989
15-0.313-0.72-2.2410.984
16-2.2410.969-1.009-0.111
170.974-1.009-0.496-0.972
18-0.272-0.490.3270.213