Model info
| Transcription factor | NR4A1 (GeneCards) | ||||||||
| Model | NR4A1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | AAAKKbYAn | ||||||||
| Best auROC (human) | 0.92 | ||||||||
| Best auROC (mouse) | 0.547 | ||||||||
| Peak sets in benchmark (human) | 12 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 491 | ||||||||
| TF family | NGFI-B-related receptors (NR4) {2.1.4} | ||||||||
| TF subfamily | NGFI-B (NR4A1) {2.1.4.0.1} | ||||||||
| HGNC | HGNC:7980 | ||||||||
| EntrezGene | GeneID:3164 (SSTAR profile) | ||||||||
| UniProt ID | NR4A1_HUMAN | ||||||||
| UniProt AC | P22736 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NR4A1 expression | ||||||||
| ReMap ChIP-seq dataset list | NR4A1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 390.0 | 18.0 | 73.0 | 10.0 |
| 02 | 401.0 | 8.0 | 70.0 | 12.0 |
| 03 | 446.0 | 13.0 | 26.0 | 6.0 |
| 04 | 62.0 | 4.0 | 287.0 | 138.0 |
| 05 | 35.0 | 28.0 | 392.0 | 36.0 |
| 06 | 54.0 | 71.0 | 138.0 | 228.0 |
| 07 | 28.0 | 387.0 | 34.0 | 42.0 |
| 08 | 420.0 | 7.0 | 20.0 | 44.0 |
| 09 | 118.0 | 125.0 | 166.0 | 82.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.147 | -1.85 | -0.511 | -2.376 |
| 02 | 1.175 | -2.566 | -0.552 | -2.216 |
| 03 | 1.281 | -2.145 | -1.507 | -2.801 |
| 04 | -0.671 | -3.109 | 0.842 | 0.116 |
| 05 | -1.224 | -1.437 | 1.153 | -1.197 |
| 06 | -0.805 | -0.538 | 0.116 | 0.613 |
| 07 | -1.437 | 1.14 | -1.252 | -1.049 |
| 08 | 1.221 | -2.677 | -1.752 | -1.004 |
| 09 | -0.039 | 0.018 | 0.299 | -0.397 |