Model info
Transcription factorNR5A2
ModelNR5A2_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusdbYCAAGGhCR
Best auROC (human)0.5549568803014672
Best auROC (mouse)0.9585219063560327
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)8
Aligned words500
TF familyFTZ-F1-related receptors (NR5){2.1.5}
TF subfamilyLRH-1 (NR5A2){2.1.5.0.2}
HGNC7984
EntrezGene2494
UniProt IDNR5A2_HUMAN
UniProt ACO00482
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.494315
0.0005 5.53427
0.0001 7.810410000000001
GTEx tissue expression atlas NR5A2 expression
ReMap ChIP-seq dataset list NR5A2 datasets
Motifs in JASPAR
PCM
ACGT
0191.088.0213.0108.0
0232.0144.0133.0191.0
0319.0222.017.0242.0
042.0474.024.00.0
05492.05.03.00.0
06470.01.015.014.0
071.01.0497.01.0
081.02.0495.02.0
0962.0213.019.0206.0
1011.0414.05.070.0
11373.014.068.045.0
PWM
ACGT
01-0.313-0.3460.528-0.144
02-1.3280.140.0610.42
03-1.8180.569-1.920.655
04-3.5731.324-1.6-4.4
051.361-2.961-3.325-4.4
061.315-3.903-2.034-2.096
07-3.903-3.9031.371-3.903
08-3.903-3.5731.367-3.573
09-0.6890.528-1.8180.495
10-2.3111.189-2.961-0.57
111.085-2.096-0.599-1.0