Model info
Transcription factorNr5a2
ModelNR5A2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusdbYCAAGGYCR
Best auROC (human)0.5374059974277926
Best auROC (mouse)0.9574032670349721
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)8
Aligned words500
TF familyFTZ-F1-related receptors (NR5){2.1.5}
TF subfamilyLRH-1 (NR5A2){2.1.5.0.2}
MGI1346834
EntrezGene26424
UniProt IDNR5A2_MOUSE
UniProt ACP45448
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.633205
0.0005 5.66464
0.0001 7.901405
GTEx tissue expression atlas Nr5a2 expression
Motifs in JASPAR
PCM
ACGT
01103.081.0208.0108.0
0234.0144.0129.0193.0
0318.0195.015.0272.0
041.0458.039.02.0
05493.01.05.01.0
06460.00.028.012.0
073.01.0493.03.0
080.01.0498.01.0
0943.0188.023.0246.0
109.0398.09.084.0
11381.022.061.036.0
PWM
ACGT
01-0.191-0.4270.504-0.144
02-1.270.140.0310.43
03-1.8680.44-2.0340.771
04-3.9031.29-1.138-3.573
051.363-3.903-2.961-3.903
061.294-4.4-1.454-2.234
07-3.325-3.9031.363-3.325
08-4.4-3.9031.373-3.903
09-1.0440.404-1.640.671
10-2.4841.15-2.484-0.392
111.106-1.681-0.705-1.215