Model info
| Transcription factor | OLIG2 (GeneCards) | ||||||||
| Model | OLIG2_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | hMWKMTGYYb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.905 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 19 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
| HGNC | HGNC:9398 | ||||||||
| EntrezGene | GeneID:10215 (SSTAR profile) | ||||||||
| UniProt ID | OLIG2_HUMAN | ||||||||
| UniProt AC | Q13516 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | OLIG2 expression | ||||||||
| ReMap ChIP-seq dataset list | OLIG2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 87.0 | 291.0 | 58.0 | 62.0 |
| 02 | 114.0 | 365.0 | 3.0 | 16.0 |
| 03 | 329.0 | 32.0 | 34.0 | 103.0 |
| 04 | 14.0 | 27.0 | 198.0 | 259.0 |
| 05 | 86.0 | 348.0 | 26.0 | 38.0 |
| 06 | 8.0 | 4.0 | 4.0 | 482.0 |
| 07 | 5.0 | 12.0 | 426.0 | 55.0 |
| 08 | 4.0 | 160.0 | 107.0 | 227.0 |
| 09 | 19.0 | 163.0 | 39.0 | 277.0 |
| 10 | 76.0 | 125.0 | 86.0 | 211.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.353 | 0.842 | -0.75 | -0.685 |
| 02 | -0.087 | 1.067 | -3.321 | -1.971 |
| 03 | 0.964 | -1.324 | -1.266 | -0.187 |
| 04 | -2.092 | -1.485 | 0.459 | 0.726 |
| 05 | -0.364 | 1.02 | -1.521 | -1.159 |
| 06 | -2.58 | -3.122 | -3.122 | 1.344 |
| 07 | -2.957 | -2.23 | 1.221 | -0.802 |
| 08 | -3.122 | 0.248 | -0.149 | 0.595 |
| 09 | -1.814 | 0.267 | -1.134 | 0.793 |
| 10 | -0.486 | 0.004 | -0.364 | 0.522 |