Transcription factor | Olig2 | ||||||||
Model | OLIG2_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 22 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nMCAKMTGYYbhbndbhhbnhn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.941 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 19 | ||||||||
Aligned words | 500 | ||||||||
TF family | Tal-related factors {1.2.3} | ||||||||
TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
MGI | MGI:1355331 | ||||||||
EntrezGene | GeneID:50913 (SSTAR profile) | ||||||||
UniProt ID | OLIG2_MOUSE | ||||||||
UniProt AC | Q9EQW6 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Olig2 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 43.0 | 82.0 | 23.0 | 0.0 | 29.0 | 78.0 | 8.0 | 1.0 | 27.0 | 81.0 | 32.0 | 0.0 | 17.0 | 64.0 | 13.0 | 1.0 |
02 | 14.0 | 99.0 | 3.0 | 0.0 | 39.0 | 263.0 | 1.0 | 2.0 | 2.0 | 73.0 | 1.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 |
03 | 47.0 | 0.0 | 2.0 | 7.0 | 380.0 | 6.0 | 12.0 | 38.0 | 3.0 | 2.0 | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 |
04 | 11.0 | 12.0 | 192.0 | 216.0 | 0.0 | 0.0 | 2.0 | 7.0 | 0.0 | 0.0 | 4.0 | 10.0 | 2.0 | 1.0 | 18.0 | 24.0 |
05 | 4.0 | 5.0 | 4.0 | 0.0 | 5.0 | 7.0 | 1.0 | 0.0 | 37.0 | 170.0 | 2.0 | 7.0 | 48.0 | 189.0 | 18.0 | 2.0 |
06 | 1.0 | 2.0 | 0.0 | 91.0 | 2.0 | 6.0 | 0.0 | 363.0 | 0.0 | 0.0 | 0.0 | 25.0 | 0.0 | 0.0 | 0.0 | 9.0 |
07 | 1.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 7.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 440.0 | 48.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 6.0 | 164.0 | 77.0 | 202.0 | 1.0 | 6.0 | 14.0 | 28.0 |
09 | 0.0 | 1.0 | 2.0 | 4.0 | 1.0 | 37.0 | 5.0 | 127.0 | 8.0 | 20.0 | 8.0 | 55.0 | 9.0 | 42.0 | 24.0 | 156.0 |
10 | 3.0 | 6.0 | 6.0 | 3.0 | 14.0 | 26.0 | 8.0 | 52.0 | 8.0 | 19.0 | 3.0 | 9.0 | 18.0 | 117.0 | 49.0 | 158.0 |
11 | 5.0 | 20.0 | 8.0 | 10.0 | 31.0 | 64.0 | 8.0 | 65.0 | 2.0 | 34.0 | 2.0 | 28.0 | 18.0 | 97.0 | 34.0 | 73.0 |
12 | 9.0 | 16.0 | 21.0 | 10.0 | 27.0 | 112.0 | 10.0 | 66.0 | 5.0 | 33.0 | 3.0 | 11.0 | 5.0 | 89.0 | 28.0 | 54.0 |
13 | 9.0 | 21.0 | 15.0 | 1.0 | 73.0 | 100.0 | 13.0 | 64.0 | 12.0 | 25.0 | 14.0 | 11.0 | 17.0 | 45.0 | 41.0 | 38.0 |
14 | 32.0 | 16.0 | 24.0 | 39.0 | 96.0 | 22.0 | 7.0 | 66.0 | 10.0 | 14.0 | 15.0 | 44.0 | 15.0 | 16.0 | 31.0 | 52.0 |
15 | 16.0 | 25.0 | 59.0 | 53.0 | 10.0 | 22.0 | 9.0 | 27.0 | 2.0 | 19.0 | 26.0 | 30.0 | 19.0 | 54.0 | 54.0 | 74.0 |
16 | 8.0 | 21.0 | 5.0 | 13.0 | 35.0 | 48.0 | 4.0 | 33.0 | 20.0 | 81.0 | 22.0 | 25.0 | 29.0 | 71.0 | 30.0 | 54.0 |
17 | 16.0 | 30.0 | 6.0 | 40.0 | 45.0 | 55.0 | 9.0 | 112.0 | 6.0 | 21.0 | 2.0 | 32.0 | 9.0 | 30.0 | 28.0 | 58.0 |
18 | 8.0 | 15.0 | 21.0 | 32.0 | 33.0 | 22.0 | 18.0 | 63.0 | 4.0 | 17.0 | 11.0 | 13.0 | 22.0 | 48.0 | 87.0 | 85.0 |
19 | 23.0 | 19.0 | 17.0 | 8.0 | 29.0 | 37.0 | 8.0 | 28.0 | 10.0 | 41.0 | 43.0 | 43.0 | 20.0 | 42.0 | 68.0 | 63.0 |
20 | 21.0 | 21.0 | 16.0 | 24.0 | 26.0 | 31.0 | 7.0 | 75.0 | 28.0 | 28.0 | 18.0 | 62.0 | 21.0 | 41.0 | 19.0 | 61.0 |
21 | 36.0 | 20.0 | 31.0 | 9.0 | 34.0 | 40.0 | 6.0 | 41.0 | 15.0 | 8.0 | 24.0 | 13.0 | 18.0 | 63.0 | 68.0 | 73.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.318 | 0.959 | -0.3 | -4.398 | -0.072 | 0.909 | -1.326 | -3.124 | -0.142 | 0.947 | 0.025 | -4.398 | -0.597 | 0.713 | -0.858 | -3.124 |
02 | -0.786 | 1.147 | -2.232 | -4.398 | 0.221 | 2.121 | -3.124 | -2.582 | -2.582 | 0.843 | -3.124 | -4.398 | -3.124 | -3.124 | -4.398 | -4.398 |
03 | 0.406 | -4.398 | -2.582 | -1.452 | 2.489 | -1.598 | -0.936 | 0.195 | -2.232 | -2.582 | -4.398 | -4.398 | -3.124 | -3.124 | -4.398 | -4.398 |
04 | -1.02 | -0.936 | 1.807 | 1.925 | -4.398 | -4.398 | -2.582 | -1.452 | -4.398 | -4.398 | -1.973 | -1.112 | -2.582 | -3.124 | -0.541 | -0.258 |
05 | -1.973 | -1.768 | -1.973 | -4.398 | -1.768 | -1.452 | -3.124 | -4.398 | 0.169 | 1.686 | -2.582 | -1.452 | 0.427 | 1.791 | -0.541 | -2.582 |
06 | -3.124 | -2.582 | -4.398 | 1.063 | -2.582 | -1.598 | -4.398 | 2.443 | -4.398 | -4.398 | -4.398 | -0.218 | -4.398 | -4.398 | -4.398 | -1.213 |
07 | -3.124 | -4.398 | -2.582 | -4.398 | -4.398 | -4.398 | -1.452 | -3.124 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | 2.635 | 0.427 |
08 | -4.398 | -4.398 | -4.398 | -3.124 | -4.398 | -4.398 | -4.398 | -4.398 | -1.598 | 1.65 | 0.896 | 1.858 | -3.124 | -1.598 | -0.786 | -0.106 |
09 | -4.398 | -3.124 | -2.582 | -1.973 | -3.124 | 0.169 | -1.768 | 1.395 | -1.326 | -0.437 | -1.326 | 0.562 | -1.213 | 0.294 | -0.258 | 1.6 |
10 | -2.232 | -1.598 | -1.598 | -2.232 | -0.786 | -0.179 | -1.326 | 0.506 | -1.326 | -0.488 | -2.232 | -1.213 | -0.541 | 1.313 | 0.447 | 1.613 |
11 | -1.768 | -0.437 | -1.326 | -1.112 | -0.006 | 0.713 | -1.326 | 0.728 | -2.582 | 0.085 | -2.582 | -0.106 | -0.541 | 1.126 | 0.085 | 0.843 |
12 | -1.213 | -0.656 | -0.39 | -1.112 | -0.142 | 1.27 | -1.112 | 0.743 | -1.768 | 0.056 | -2.232 | -1.02 | -1.768 | 1.041 | -0.106 | 0.544 |
13 | -1.213 | -0.39 | -0.719 | -3.124 | 0.843 | 1.157 | -0.858 | 0.713 | -0.936 | -0.218 | -0.786 | -1.02 | -0.597 | 0.363 | 0.271 | 0.195 |
14 | 0.025 | -0.656 | -0.258 | 0.221 | 1.116 | -0.344 | -1.452 | 0.743 | -1.112 | -0.786 | -0.719 | 0.341 | -0.719 | -0.656 | -0.006 | 0.506 |
15 | -0.656 | -0.218 | 0.632 | 0.525 | -1.112 | -0.344 | -1.213 | -0.142 | -2.582 | -0.488 | -0.179 | -0.038 | -0.488 | 0.544 | 0.544 | 0.857 |
16 | -1.326 | -0.39 | -1.768 | -0.858 | 0.114 | 0.427 | -1.973 | 0.056 | -0.437 | 0.947 | -0.344 | -0.218 | -0.072 | 0.816 | -0.038 | 0.544 |
17 | -0.656 | -0.038 | -1.598 | 0.246 | 0.363 | 0.562 | -1.213 | 1.27 | -1.598 | -0.39 | -2.582 | 0.025 | -1.213 | -0.038 | -0.106 | 0.615 |
18 | -1.326 | -0.719 | -0.39 | 0.025 | 0.056 | -0.344 | -0.541 | 0.697 | -1.973 | -0.597 | -1.02 | -0.858 | -0.344 | 0.427 | 1.018 | 0.995 |
19 | -0.3 | -0.488 | -0.597 | -1.326 | -0.072 | 0.169 | -1.326 | -0.106 | -1.112 | 0.271 | 0.318 | 0.318 | -0.437 | 0.294 | 0.773 | 0.697 |
20 | -0.39 | -0.39 | -0.656 | -0.258 | -0.179 | -0.006 | -1.452 | 0.87 | -0.106 | -0.106 | -0.541 | 0.681 | -0.39 | 0.271 | -0.488 | 0.665 |
21 | 0.142 | -0.437 | -0.006 | -1.213 | 0.085 | 0.246 | -1.598 | 0.271 | -0.719 | -1.326 | -0.258 | -0.858 | -0.541 | 0.697 | 0.773 | 0.843 |